Pairwise Alignments

Query, 692 a.a., DNA polymerase III subunit gamma/tau from Vibrio cholerae E7946 ATCC 55056

Subject, 736 a.a., DNA polymerase III, tau subunit from Pseudomonas syringae pv. syringae B728a

 Score =  508 bits (1307), Expect = e-148
 Identities = 312/734 (42%), Positives = 412/734 (56%), Gaps = 48/734 (6%)

Query: 1   MSYLALARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAK 60
           MSY  LARKWRP  F E+VGQ+HVL AL NAL   RLHHAYLF+GTRGVGKTTI R+ AK
Sbjct: 1   MSYQVLARKWRPRSFREMVGQAHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAK 60

Query: 61  GLNCETGITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRF 120
            LNCETGIT+TPCG C+ C+EID+GRFVDL+EIDAASRTKVEDTRELLDNVQY P+RGRF
Sbjct: 61  CLNCETGITSTPCGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRF 120

Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISV 180
           KVYLIDEVHMLS HSFNALLKTLEEPP YVKF+LATTDPQKLP TILSRCLQF LK ++ 
Sbjct: 121 KVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSRCLQFSLKNMTP 180

Query: 181 ENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVVKSDIVAHM 240
           E + + L  VL  E +  +  AL LL  AADGSMRDA+SLTDQAIA G G V +  V  M
Sbjct: 181 ERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIAFGEGKVMAADVRAM 240

Query: 241 LGTLDTDHSLHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLHRIAMYQALPA 300
           LGTLD      +L A+     + V++ +  LA+ G +W+G+L ++   LHR+A+ QALP 
Sbjct: 241 LGTLDHGQVFDVLTALLEGDARGVLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPE 300

Query: 301 TLDKSLPEASRIESLAKTLAPQDVQLYYQIALKGRQDLPLSPTARIGIEMLMLRMMAFRP 360
            +D    +  R+ +LA+ L  +DVQ YYQ+ L GR+DLPL+P  R G EM++LRM+AFRP
Sbjct: 301 GVDNGHGDRDRVLALAQALPAEDVQFYYQMGLIGRRDLPLAPDPRGGFEMVLLRMLAFRP 360

Query: 361 SH-----------VSLASVIVPPNTAV--------------TAPTIAAPTSQMAAAAP-- 393
           +            V ++   V    AV              +AP +AAP     A  P  
Sbjct: 361 ADSEDAPRQPLKPVGISQATVDSRKAVADATPVASAAPAVSSAPVMAAPDPSFEALPPAA 420

Query: 394 QPQPVAQSNVSQSASQAMPHPVAPPM------------MAAQPVVESAVPVTQREASHSI 441
            P+P A         ++ P P A P+             AA+P  E+A P T   A    
Sbjct: 421 APKPPAARPEPAVQPESKPEPQAAPVEDLDLPWNEPKSPAAEPAAETA-PDTDTAAE--- 476

Query: 442 NAPEASVVTNTDTQSQASMPALAGLRHQLRSKRQEVQNKGADGKKSDA-TSATPASALER 500
              E  + T ++      MP  A       +   E +   A+ + + A   A P SA   
Sbjct: 477 PVAEPVLETVSEQPDLTPMPTPAPASPVPAAPEAEPEQPVAEQQDAPAMLEAIPDSAYLS 536

Query: 501 IAQRAQQVQVSPERNDEDELEPEEEIYQWRPMQPIEVAVKSEVTPTQLKKALEHEKTPEM 560
               +      P   D++    ++ +     + P   +   E+    + +    E  P  
Sbjct: 537 THTDSMSSDSGPMGRDDEPPADDDYVEPDIDIDPASYSYLDELAHESVVELEAVEPEPAP 596

Query: 561 GAKLIEEAVAQDAWSALVQRLETAKMVEQLALNSAFVR-QGDQISLTLRPSHAHLHNEKA 619
            AK      A+  W  +  +L  + M   +A N   +   GD   L L P+H+ L N   
Sbjct: 597 AAKPATGLAAE--WLDVFPKLPISGMTGSIAANCTLISVDGDNWLLHLDPAHSALFNSTQ 654

Query: 620 QQELEQALNHVLGEACSLNI-TVGQEGETPLELRERLYQQKLTSALHSLQTDPNVQFIER 678
           Q+ L  ALN   G   +L+I  +  E ETP +   RL  ++   A  S+Q DP +Q + +
Sbjct: 655 QRRLNDALNQYHGRTINLSIELIKPEQETPAQAASRLRAERQRQAEASIQADPYIQQMLQ 714

Query: 679 RFNAQLDSDSVRPI 692
           +F A +  D+++P+
Sbjct: 715 QFGAVIREDTIKPV 728