Pairwise Alignments

Query, 692 a.a., DNA polymerase III subunit gamma/tau from Vibrio cholerae E7946 ATCC 55056

Subject, 909 a.a., DNA-directed DNA polymerase (RefSeq) from Shewanella amazonensis SB2B

 Score =  435 bits (1119), Expect = e-126
 Identities = 241/451 (53%), Positives = 296/451 (65%), Gaps = 18/451 (3%)

Query: 1   MSYLALARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAK 60
           MSY  LARKWRP  F+EVVGQSHVL AL NAL Q RLHHAYLF+GTRGVGKT++ RLFAK
Sbjct: 1   MSYQVLARKWRPANFAEVVGQSHVLHALTNALGQQRLHHAYLFTGTRGVGKTSLARLFAK 60

Query: 61  GLNCETGITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRF 120
           GLNCE GITATPCGQC+ C+EI +GRFVDL+E+DAASRTKV+DTRE+LDNVQY+P+RGRF
Sbjct: 61  GLNCEQGITATPCGQCSACREIAEGRFVDLIEVDAASRTKVDDTREILDNVQYRPSRGRF 120

Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISV 180
           KVYLIDEVHMLS+ SFNALLKTLEEPPE+VKFLLATTDPQKLPVT+LSRCLQF+LK ++ 
Sbjct: 121 KVYLIDEVHMLSKSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKALTQ 180

Query: 181 ENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVVKSDIVAHM 240
             IQ QL  VL  E +  D  AL+LLA AA GSMRDALSLTDQAIA G G V+   V  M
Sbjct: 181 PQIQAQLAAVLSGEGLGFDEDALSLLAKAAAGSMRDALSLTDQAIAFGGGEVRLAQVQTM 240

Query: 241 LGTLDTDHSLHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLHRIAMYQALPA 300
           LG +D    L+L  A+     + ++    T    G + D +L+ L   LH+I++ Q  PA
Sbjct: 241 LGAIDKGQILNLFDALCQGDIETLLTTARTAMGFGADADEVLRALLELLHQISLAQFAPA 300

Query: 301 TLDKSLPEASRIESLAKTLAPQDVQLYYQIALKGRQDLPLSPTARIGIEMLMLRMMAFRP 360
           T   S    + + + A+ L P+ VQLYYQI L GR+DLP +P    G+EM +LR + F P
Sbjct: 301 TASIS-DNGAAVLAWAQALKPEQVQLYYQILLSGRKDLPYAPDPASGLEMSLLRAVGFVP 359

Query: 361 -------------SHVSLASVIVPPNTAVTAPTI-AAPTSQMAAAAPQPQPVAQSNVSQS 406
                        S      ++ P     +AP    AP   +    P    V Q+ +   
Sbjct: 360 EKPVSRWQSGEGVSAAEALKLVAPSTEGKSAPQADTAPNHAVVTETPVAAAVPQAGI--- 416

Query: 407 ASQAMPHPVAPPMMAAQPVVESAVPVTQREA 437
           AS  +    +P     +P V++   V   EA
Sbjct: 417 ASTLVAGTHSPVRTTEEPAVKADSSVATEEA 447



 Score = 70.1 bits (170), Expect = 4e-16
 Identities = 84/342 (24%), Positives = 129/342 (37%), Gaps = 30/342 (8%)

Query: 367 SVIVPPNTAVTAPTIAAPTSQMAAAAPQPQPVAQSNVSQSASQAMPHPVAPPMMAAQPVV 426
           S +V  +  V  P  A     + A     + +     S++       PV+        V 
Sbjct: 553 SKVVAESQPVNTPASAFGDDLLDAVLAAREDLLSGITSEAKEDEAKKPVSSFERRRMAVQ 612

Query: 427 E-SAVPVTQREASH------SINAPEASVVTNTDTQSQASMPALAGLRHQLRSKRQEVQN 479
           E S VPVT            S+ A  A+  T T TQ+ AS+          R   +    
Sbjct: 613 ETSTVPVTTAPTDKGTQDEISLGAMSANTQTATLTQATASVSGADVAADYDRPPWE---- 668

Query: 480 KGADGKKSDATSATPASALERIAQRAQQVQVSPERNDEDELEPEEEIYQWRPMQPIEVAV 539
              D    D +S  P  AL+    R    + +P   +  +    EE     P       +
Sbjct: 669 ---DTATPDDSSKAPELALDYAVNR----ESAPVNAESPDKAHPEEYTSAAPHTQTPQPL 721

Query: 540 KSEVTPTQLKKALEH--EKTPEMGAKLIEEAVAQDA--------WSALVQRLETAKMVEQ 589
           K+E       K   H  E +   G      + A           W  L+  LE    V Q
Sbjct: 722 KAESQTALQAKGQTHTDEVSSSDGVHCANHSAASPIGGDETDLRWYKLMGALEIGGRVRQ 781

Query: 590 LALNSAFVRQGDQISLTLRPSHAHLHNEKAQQELEQALNHVLGEACSLNITVGQ--EGET 647
           LA+NS  +   + I L L+    HL    A  +L +AL+  LG    + + VG+    ET
Sbjct: 782 LAVNSVCLAWSNPIPLVLKQDQKHLAAPVAIGQLNEALSKALGHEAEIALEVGEVPGRET 841

Query: 648 PLELRERLYQQKLTSALHSLQTDPNVQFIERRFNAQLDSDSV 689
           PL++R R +++ L+ A  +L TDP V  + ++  A  D DS+
Sbjct: 842 PLDIRARFHRELLSDARGALNTDPAVLRLMQQAGAWFDDDSI 883