Pairwise Alignments

Query, 692 a.a., DNA polymerase III subunit gamma/tau from Vibrio cholerae E7946 ATCC 55056

Subject, 1113 a.a., DNA polymerase III, subunits gamma and tau (RefSeq) from Shewanella loihica PV-4

 Score =  445 bits (1145), Expect = e-129
 Identities = 277/606 (45%), Positives = 360/606 (59%), Gaps = 31/606 (5%)

Query: 1   MSYLALARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAK 60
           MSY  LARKWRP  F +VVGQSHVL AL NAL+QNRLHHAYLF+GTRGVGKT++ RLFAK
Sbjct: 1   MSYQVLARKWRPATFEQVVGQSHVLHALTNALSQNRLHHAYLFTGTRGVGKTSLARLFAK 60

Query: 61  GLNCETGITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRF 120
           GLNCE G+TATPCGQCA+C EI QGRFVDL+E+DAASRTKV+DTRELLDNVQY+P RGRF
Sbjct: 61  GLNCEQGVTATPCGQCASCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 120

Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISV 180
           KVYLIDEVHMLSR SFNALLKTLEEPPE+VKFLLATTDPQ+LPVT+LSRCLQF+LK +++
Sbjct: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSRCLQFNLKSLTL 180

Query: 181 ENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVVKSDIVAHM 240
           + I  QL  +L  EQ+  D  A+ LLA AA+GSMRDALSLTDQAIA G G V+   V  M
Sbjct: 181 DEICVQLGHILAQEQVGYDDGAVKLLAKAANGSMRDALSLTDQAIAFGAGQVRLTQVQTM 240

Query: 241 LGTLDTDHSLHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLHRIAMYQALPA 300
           LGT+D  H + LL+A+       +M     +   G +   +L+ L   LH+I + Q  P+
Sbjct: 241 LGTIDEHHVIVLLKALCDGDVDLLMKVTGDVLSFGADPHEVLRSLLELLHQITLTQFAPS 300

Query: 301 TLDKSLPEASRIESLAKTLAPQDVQLYYQIALKGRQDLPLSPTARIGIEMLMLRMMAFRP 360
               S   A +I++ AK L P+ VQLYYQ+ L GRQDLP +P  + G+EM +LR +AF P
Sbjct: 301 AAQLS-QYAEQIKAFAKQLRPEQVQLYYQLLLNGRQDLPHAPDPKSGLEMALLRAIAFVP 359

Query: 361 SHV------SLASVIVPPNTAVTAPTI-----AAPTSQMAAAAPQPQPVAQSNVSQSASQ 409
                       S I+ P+T +  P +      APTS       +P   A+S V  S ++
Sbjct: 360 EAPVQRWMGEAGSEILLPDTPL--PELGKGEDVAPTSARPDGTVKPVKPAES-VLNSQAE 416

Query: 410 AMPHPVAPPMMAAQPVVESAVPVTQREASHSINAPEASVVTNTDTQSQASMPALAGLRHQ 469
           A     A     A+    +   V     + +  A + + +++TD   +A++ A+      
Sbjct: 417 AEVEDKAEVEEKAKVEASNEASVAMLSDAQASTAEQTNKLSDTDGPFEANLVAV------ 470

Query: 470 LRSKRQEVQNKGADGKKSDATSATPASALERIAQRAQQVQVSPE------RNDEDELEPE 523
                 E  +   D  + D  +    +  + I  +AQ    SPE       N   E  PE
Sbjct: 471 ---DLVEADSTEKDALEEDEGALDLFAEQQLILSQAQSKGHSPELSAELSTNHSPEPSPE 527

Query: 524 EEIYQWRPMQPIEVAVKSEVTPTQLKKALEHEKTPEMGAKLIEEAVAQDAWSALVQRLET 583
            E       Q    A KS V+    +  ++   T    A+  E A++ +         +T
Sbjct: 528 PESSPEPSPQETSSANKSPVSEASAESKVD-ASTSAATAQGGEAALSTEPKMPAESVEQT 586

Query: 584 AKMVEQ 589
           A + EQ
Sbjct: 587 ASIAEQ 592



 Score = 80.5 bits (197), Expect = 4e-19
 Identities = 79/321 (24%), Positives = 136/321 (42%), Gaps = 42/321 (13%)

Query: 377  TAPTIAAPTSQMAAAAPQPQPVAQSNVSQSASQAMPHPVAPPMMAAQPVVESAVPVTQRE 436
            TA T  A  ++    AP+ Q    +  +Q  +  +     PP ++ +P +++        
Sbjct: 799  TAVTNEAGKTEHGTKAPETQ---HNYSAQQPNAYLNDEDRPPWVSPEPSLQAVT------ 849

Query: 437  ASHSINAPEASVVTNTDTQSQASMPALAGLRHQLRSKRQEVQNKGADGKKSDATSATPAS 496
             + S   P  +   +T ++S A   A A +   L      ++++  D +  D  S    S
Sbjct: 850  -APSDEVPNLAGQVDTQSESHARADAAAQIEQGL--DELSLEDQSLDDQSLDDQSLDDQS 906

Query: 497  ALERIAQRAQQVQVSPERNDEDELEPEEEIYQWRPMQPI---EVAVKSEVTPTQLKKALE 553
                          S + N +D+   E   +   P+Q     EV+  S VT        E
Sbjct: 907  --------------SEDLNSDDQGSNESGAFGNHPVQSPAAQEVSAPSAVT--------E 944

Query: 554  HEKTPEMGAKLIEEAVAQDA---WSALVQRLETAKMVEQLALNSAFVRQGDQISLTLRPS 610
                    A + +E    D    W  L+  LE    V QLA+N+      + + L L+P+
Sbjct: 945  PVSQTTQVAFVADEITGHDTDLKWYRLMSALEIGGRVRQLAVNAVCKAFSEPLPLVLKPN 1004

Query: 611  HAHLHNEKAQQELEQALNHVLGEACSLNITVG--QEGETPLELRERLYQQKLTSALHSLQ 668
              HL    A  +LE AL+  LG +C +  +VG   E ETPLE+R+R +++ L  A   L 
Sbjct: 1005 QKHLAAPGAISQLEDALSKALGGSCQVAFSVGVEPERETPLEIRQRFHRELLEQAHQGLL 1064

Query: 669  TDPNVQFIERRFNAQLDSDSV 689
             D N+Q++ +   A+++ DS+
Sbjct: 1065 QDENIQWLTQVMQAEMEPDSL 1085