Pairwise Alignments

Query, 692 a.a., DNA polymerase III subunit gamma/tau from Vibrio cholerae E7946 ATCC 55056

Subject, 1002 a.a., DNA polymerase III, gamma and tau subunits (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  441 bits (1133), Expect = e-127
 Identities = 243/460 (52%), Positives = 311/460 (67%), Gaps = 9/460 (1%)

Query: 1   MSYLALARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAK 60
           MSY  LARKWRP  F ++VGQSHVL AL NAL Q RLHHAYLF+GTRGVGKT++ RLFAK
Sbjct: 1   MSYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAK 60

Query: 61  GLNCETGITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRF 120
           GLNCETG+TA+PCG C +C EI QGRFVDL+E+DAASRTKV+DTRELLDNVQY+P RGRF
Sbjct: 61  GLNCETGVTASPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 120

Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISV 180
           KVYLIDEVHMLSR SFNALLKTLEEPPE+VKFLLATTDPQKLPVT+LSRCLQF+LK ++ 
Sbjct: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQ 180

Query: 181 ENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVVKSDIVAHM 240
           + I  QL  +L  EQ+  + +AL LLA +A+GSMRDALSLTDQAIA G G V  + V  M
Sbjct: 181 QEIGTQLQHILTQEQLPFEHEALGLLAKSANGSMRDALSLTDQAIAFGGGTVMLNQVQSM 240

Query: 241 LGTLDTDHSLHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLHRIAMYQALPA 300
           LG++D  H L LL+A++     A+M     +   G +   +L+ L   LH+I + Q  PA
Sbjct: 241 LGSIDEQHVLGLLKALTDADIGALMQSCAQVLAYGADAQEVLRSLLELLHQITLTQFAPA 300

Query: 301 TLDKSLPEASRIESLAKTLAPQDVQLYYQIALKGRQDLPLSPTARIGIEMLMLRMMAFRP 360
              +SL  A +I++ A+ LAP+ VQLYYQI L GR+DLP +P  + G+EM +LR +AF P
Sbjct: 301 AAQQSLYSA-QIQAFAEQLAPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFVP 359

Query: 361 SHVSLASVIVPPNTAVTAPTIAAPTSQMAAAAPQPQPVAQS---NVSQSASQAMPHPVAP 417
                   +   + AV     A P     A  P   P  +    N   +  + +   VA 
Sbjct: 360 EKSVKRWQV---DDAVKVDLSAQPALTPQATIPPEVPAERQLAVNAPVAEKKTLLATVAN 416

Query: 418 P--MMAAQPVVESAVPVTQREASHSINAPEASVVTNTDTQ 455
           P   + A+   E+A+   + E + ++ A +  +++   +Q
Sbjct: 417 PEAQLQAETTPETALEDDEPELNAALIAEQQVILSQAQSQ 456



 Score = 82.8 bits (203), Expect = 7e-20
 Identities = 47/118 (39%), Positives = 69/118 (58%), Gaps = 2/118 (1%)

Query: 574 WSALVQRLETAKMVEQLALNSAFVRQGDQISLTLRPSHAHLHNEKAQQELEQALNHVLGE 633
           W  L+  L+    V QLA+NS    Q + + L L+P   HL  + A ++LEQAL   LG 
Sbjct: 864 WYKLMASLDIGGRVRQLAVNSICQVQSNPLPLLLKPDQKHLAAQVAIEQLEQALTAALGA 923

Query: 634 ACSLNITVGQEG--ETPLELRERLYQQKLTSALHSLQTDPNVQFIERRFNAQLDSDSV 689
              + + +G +   ETPLELR+R +Q+ L  A  SL  D NVQ++  RF A+L++DS+
Sbjct: 924 PRQVEVVIGTDPSRETPLELRKRFHQELLQQARQSLIMDDNVQWLINRFGAELENDSL 981