Pairwise Alignments

Query, 692 a.a., DNA polymerase III subunit gamma/tau from Vibrio cholerae E7946 ATCC 55056

Subject, 1040 a.a., DNA polymerase III, subunits gamma and tau (RefSeq) from Shewanella sp. ANA-3

 Score =  442 bits (1138), Expect = e-128
 Identities = 251/509 (49%), Positives = 324/509 (63%), Gaps = 13/509 (2%)

Query: 1   MSYLALARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAK 60
           MSY  LARKWRP  F ++VGQSHVL AL NAL Q RLHHAYLF+GTRGVGKT++ RLFAK
Sbjct: 1   MSYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAK 60

Query: 61  GLNCETGITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRF 120
           GLNCE G+TA+PCG C +C EI QGRFVDL+E+DAASRTKV+DTRELLDNVQY+P RGRF
Sbjct: 61  GLNCEKGVTASPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 120

Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISV 180
           KVYLIDEVHMLSR SFNALLKTLEEPP++VKFLLATTDPQKLPVT+LSRCLQF+LK ++ 
Sbjct: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPKHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQ 180

Query: 181 ENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVVKSDIVAHM 240
           + I  QL  +L  EQ+  + +AL LLA AA+GSMRDALSLTDQAIA G G V  + V  M
Sbjct: 181 QEIGTQLQHILTQEQLPFEHEALTLLAKAANGSMRDALSLTDQAIAFGGGTVMLNQVQSM 240

Query: 241 LGTLDTDHSLHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLHRIAMYQALPA 300
           LG++D  H L LL+A++      +M     +   G +   +L+ L   LH+I + Q  PA
Sbjct: 241 LGSIDEQHVLRLLKALTDADIGVLMQSCAQVLAYGADAQEVLRSLLELLHQITLTQFAPA 300

Query: 301 TLDKSLPEASRIESLAKTLAPQDVQLYYQIALKGRQDLPLSPTARIGIEMLMLRMMAFRP 360
              +SL  A +I++ A+ LAP+ VQLYYQI L GR+DLP +P  + G+EM +LR +AF P
Sbjct: 301 AAQQSLYSA-QIQAFAEQLAPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFVP 359

Query: 361 SHVSLASVIVPPNTAVTAPTIAAPTSQMAAAAP-QPQPVAQSNVSQSASQAMPHPVAPPM 419
                    V       A  ++ P  Q  +  P    PV +  V+Q+ ++      A   
Sbjct: 360 EKP------VKRWQVEDAAKVSLPAQQPTSTTPASNMPVVEQAVNQAVAEKKTPLTAERD 413

Query: 420 MAAQPVVESAVPVTQRE---ASHSINAPEASVVTNTDTQSQASMPALAGLRHQLRSKRQE 476
               P    + P+ + E   AS    + E  +  +     +A + A      Q+   +  
Sbjct: 414 SQTLPQAAISEPMAKSENTTASQQALSAEDMLAVDDAIDDEAELNAALIAEQQVILSQAH 473

Query: 477 VQNKGADGKKSDATSA--TPASALERIAQ 503
            Q  GA+ +    T A  TP + ++  A+
Sbjct: 474 SQGFGANAETVSRTEALSTPEAKVDSSAE 502



 Score = 92.8 bits (229), Expect = 7e-23
 Identities = 111/399 (27%), Positives = 165/399 (41%), Gaps = 37/399 (9%)

Query: 299  PATLDKSLPEASRIESLAKTLAPQDVQLYYQIALKGRQDLPLSPTARIGIEMLMLRMMAF 358
            PA+   SL +    + L+  LA +D  L    AL  ++     P A + ++         
Sbjct: 650  PASTTVSLEDD---DILSAVLAARDSLLSDLDALSTKEGDGKKPAAEVKLKTPSQNAHTA 706

Query: 359  RPSHVSLASVIVPPNTAVTAPTIAAPTSQMAAAAPQPQPVAQSNVSQSASQAMPHPVAPP 418
              SH +  S   P   A   P +A   S      P           +S S   P P   P
Sbjct: 707  PVSHAT--SQNTPSVDASIKPQVANNASDNEFELPFDDDFEAELHLESQSNVTPTPPLDP 764

Query: 419  MMAAQPVVESAVPVTQREASHSINAPEASVVTNTDTQSQASMPALAGLRHQLRSKRQEVQ 478
                +P  E A PV   + +H   AP ASV    + Q+++ + A   + H   +      
Sbjct: 765  N--DRPPWEEA-PVAAMDETH---APAASV----NLQTESPVAAQTAVEHLGAAP----- 809

Query: 479  NKGADGKKSDATSATPASALERIA-QRAQQVQVSPERNDEDELEPEEEIY---QWRPMQP 534
               A    +D  +     ALE+ A Q ++    SPE N   + + +E      Q +  QP
Sbjct: 810  -VAAQISPTDREATRVVQALEQAAGQESEPATQSPEPNTPQQPQAKELTQPKTQPQTQQP 868

Query: 535  IEVAVKSEVT--PTQLKKALEHEKTPEMGAKLIEEAVAQDAWSALVQRLETAKMVEQLAL 592
              V  +S  T  PT          T    A+ I        W  L+  LE    V QLA+
Sbjct: 869  ASVQSQSSETVQPTS--------STALALAQSITGHPLDLHWYKLMASLEIGGRVRQLAV 920

Query: 593  NSAFVRQGDQISLTLRPSHAHLHNEKAQQELEQALNHVLGEACSLNITVGQEG--ETPLE 650
            NS    Q + + L L+P   HL    A ++LEQAL   LG    + + +G +   ETPLE
Sbjct: 921  NSICQVQANPLPLLLKPDQKHLAAPVAIEQLEQALTAALGNPRQVEVVIGTDPARETPLE 980

Query: 651  LRERLYQQKLTSALHSLQTDPNVQFIERRFNAQLDSDSV 689
            +R+R +Q+ L  A  SL  D NVQ++  RF A+LD D++
Sbjct: 981  MRKRFHQELLQQARQSLMMDDNVQWLINRFGAELDQDTL 1019