Pairwise Alignments

Query, 299 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 310 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  141 bits (356), Expect = 2e-38
 Identities = 84/288 (29%), Positives = 150/288 (52%), Gaps = 4/288 (1%)

Query: 9   MKLDDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEA 68
           M L+ + +F  VVE GS+T  +K   +  AT++R+I  LE     +LL R  R L LTEA
Sbjct: 1   MDLNRVQIFAQVVEQGSFTGAAKALGLTKATVSRKIAELEADTGTQLLFRTTRALKLTEA 60

Query: 69  GERFYKDCSPLLERLASMTEEITDECRGASGRIRISAPSNLTKRMMMPMFNAFMEKYPDI 128
           G  +Y   + +L  L S   +++   +   G ++I  P  L +  + P+F  F+  YPDI
Sbjct: 61  GSSYYNRINKILSDLQSAENQLSAHQQLIKGNLKIVCPIELGQLFLGPIFAKFLTLYPDI 120

Query: 129 HIELMMSNQADDLDPTEWDVIFRVGPQRDSSLIARKIGEVKDILVASPQYLSSHPQPTHA 188
            I+  ++N+  D+     D++F++    DS L +  +      L+ASP+YL+ H  P   
Sbjct: 121 TIDAELTNRKVDVIEEGIDLLFQIADSHDSRLQSYSLVNAYKSLMASPKYLAEHGTPKVP 180

Query: 189 EELHQHQLLK---GYPLLKWQLTNSQGETVVNSDRGRFQASALNVVRSACSEGLGITLMP 245
           ++L +H+ ++    +    W+L + +   V+     +   + + + R A   GLGIT +P
Sbjct: 181 QDLAKHKAIRLQSAHIEGAWKLFDGKSWVVIEPVT-QLTVNNVTIAREAAIAGLGITAVP 239

Query: 246 DVMLREFLEDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFV 293
            ++ +E +E G LV +L D+      + + Y  + + P K R+FI+F+
Sbjct: 240 SIIAQEAVEKGYLVPLLDDYPMVQTKVVLSYPKRAYLPRKYRVFIEFI 287