Pairwise Alignments

Query, 708 a.a., fatty acid oxidation complex subunit alpha FadJ from Vibrio cholerae E7946 ATCC 55056

Subject, 715 a.a., fatty oxidation complex, alpha subunit FadB from Pseudomonas stutzeri RCH2

 Score =  408 bits (1049), Expect = e-118
 Identities = 254/706 (35%), Positives = 393/706 (55%), Gaps = 28/706 (3%)

Query: 19  LAIDVPGEKMNTLQAAFAEEM-QAVFATLNEKRGQIKGLIIHSLKPDNFIAGADVRMLEA 77
           L  D+ GE +N        ++ QAV A   +    +KG+I+ S K D FI GAD+     
Sbjct: 20  LNFDLKGESVNKFNRLTLNDLRQAVDAIKAD--ASVKGVIVTSGK-DVFIVGADITEFVD 76

Query: 78  CQSVHEAQALAS--QGQQMFQQLADLPFPVVAAIHGPCLGGGLELALACDYRVCTEDEVT 135
              + + + +A   +  ++F    DL  P VAAI+G  LGGG E+ +A DYRV +     
Sbjct: 77  NFKMADEELVAGNLEANKIFSDFEDLGVPTVAAINGIALGGGFEMCMAADYRVMST--TA 134

Query: 136 RLGLPEVMLGLLPGSGGTQRLPRLIGLLPALDLILTGKQLRAKKAKKLGVVDACVPHSVL 195
           ++GLPEV LG+ PG GGT RLPRLIG+  A++ I +GK+ RA+ A K+  VDA V    L
Sbjct: 135 KVGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVHAVDAVVAPDKL 194

Query: 196 ----LDVAKRLLE-EKGHKKRAQVTLPIKEKLLANTDLGRKLIFDQAAKKTQQKTRGNYP 250
               LD+ KR +  E  +K + Q   P  +KL  N  + + + F+ +      +   NYP
Sbjct: 195 QAAALDLVKRAISGELDYKAKRQ---PKLDKLKLNA-IEQMMAFETSKAFVAGQAGPNYP 250

Query: 251 AAQAILEVIQYGLEKGMHAGLEYEAKRFAELVMTRESKALRSIFFATTEMKKDLGA-DAK 309
           A    ++ IQ          +E EA  F +L  T  +++L  +F +  E+KK   A D +
Sbjct: 251 APVEAIKTIQKAANFTRDKAIEVEAAGFVKLAKTSVAQSLVGLFLSDQELKKKAKAYDKQ 310

Query: 310 PAPVAAVGVLGGGLMGAGISHVTVAKAKTSVRIKDVANDGVLNALNYNYKLFDKQRQRKI 369
              V    VLG G+MG GI++ +  K  T + +KD+  +G+   L+   KL  K+ ++  
Sbjct: 311 ARDVKLAAVLGAGIMGGGIAYQSAVKG-TPILMKDIREEGIQMGLDEASKLLGKRVEKGR 369

Query: 370 LTKAQLQAQMSQLSGGTGFVGFDRCDVVIEAVFEDLKLKQQMVADIEANAKPTTIFATNT 429
           LT  ++   ++ +     +  F   D+V+EAV E+ K+K  ++A++E + +   I A+NT
Sbjct: 370 LTADKMAQALNAIRPTMSYGDFGNVDIVVEAVVENPKVKHAVLAEVEGHVREDAIIASNT 429

Query: 430 SSLPIHQIASQAQRPQNIVGLHYFSPVEKMPLVEVIPHATTSDETIATVVTLARKQGKTP 489
           S++ I+ +A   +RP+N  G+H+F+PV  MPLVEVI    TS+  IAT V  A+K GK+P
Sbjct: 430 STISINYLAQALKRPENFCGMHFFNPVHMMPLVEVIRGEKTSEVAIATTVAYAKKMGKSP 489

Query: 490 IVVKDCAGFYVNRILAPYMNEAAQVLMAGEPIEKLDAALLDFGFPVGPITLLDEVGVDIG 549
           +VV DC GF VNR+L PY    A+ +  G    + D  +  FG+P+GP  L+D VG+D G
Sbjct: 490 VVVNDCPGFLVNRVLFPYFGGFARAIAHGVDFVRADKVMEKFGWPMGPAYLMDVVGMDTG 549

Query: 550 AKIMPILVKELGPRFQGP--DVFDVLLKDNRKGRKSGKGFYTY----KGSKKKEVDKSVY 603
                ++ +    R +       DV+ + NR G+K+GKGFY Y    KG  KK VD   Y
Sbjct: 550 HHGRDVMAEGFPDRMKDDTRTAVDVMYEANRLGQKNGKGFYAYEMDKKGKPKKVVDAQAY 609

Query: 604 KLLK--LTPESKLNDKEIAMRCLLPMLNEAVRCLDEGIIRSARDGDMGAIFGIGFPPFLG 661
           +LLK  +    +L+D++I    ++P+  E VRCL++GI+ +A + DMG I+GIGFPPF G
Sbjct: 610 ELLKPIVAETRELSDEDIINYMMIPLCLETVRCLEDGIVETAAEADMGLIYGIGFPPFRG 669

Query: 662 GPFRYMDTLGLTKVVEMMNQHTEKYGERFAPCDGLLTRAGLGEKFY 707
           G  RY+D++G+ + V M +++ +  G  + P   L   A  G++FY
Sbjct: 670 GALRYIDSIGVAEFVAMADKYAD-LGPLYHPTAKLREMAANGQRFY 714