Pairwise Alignments

Query, 708 a.a., fatty acid oxidation complex subunit alpha FadJ from Vibrio cholerae E7946 ATCC 55056

Subject, 708 a.a., 3-hydroxyacyl-CoA dehydrogenase, NAD-binding (RefSeq) from Shewanella loihica PV-4

 Score =  322 bits (825), Expect = 4e-92
 Identities = 213/644 (33%), Positives = 347/644 (53%), Gaps = 49/644 (7%)

Query: 66  FIAGADVRMLEACQSVHEAQALASQGQQMFQQLADLPFPVVAAIHGPCLGGGLELALACD 125
           F  GAD+    +  ++ E         Q+   L   P  VVAA++G  LGGG EL LACD
Sbjct: 59  FCGGADISEFSSDDALAEPNL-----PQVCDALEASPKLVVAAVNGLALGGGCELTLACD 113

Query: 126 YRVCTEDEVTRLGLPEVMLGLLPGSGGTQRLPRLIGLLPALDLILTGKQLRAKKAKKLGV 185
           YR+       +LGLPEV LG+LPG+GGTQRLPR+ G+  AL++I +G+ L A      GV
Sbjct: 114 YRIALP--AAKLGLPEVNLGILPGAGGTQRLPRIGGVQLALEMITSGRPLGAAAMLDAGV 171

Query: 186 VDACVPHS-----VLLDVAKRLLEEKGHK-KRAQVTLPIKEKLLANTDLGRKLIFDQAAK 239
           +D             +D A+ L+ +  HK KR+   + +    +++       IF++   
Sbjct: 172 IDNLYQDGGNFIQAAVDFAQELVAQ--HKPKRSCFEMSVDTSNISSE------IFNEFRA 223

Query: 240 KTQQKTRGNYPAAQAILEVIQYGLEKGMHAGLEYEAKRFAELVMTRESKALRSIFFATTE 299
              +++RG Y A +  ++ ++   E  +  GL+ E + F E + T +++A + +FFA   
Sbjct: 224 AIARRSRGYY-APERCIQAVEAACELPLAEGLKREHQLFMECLDTPQARAQQHLFFAERG 282

Query: 300 MKKDLGADAKPAP---VAAVGVLGGGLMGAGISHVTVAKAKTSVRIKDVANDGVLNALNY 356
           + K  G + K      +  V V+G G MG GI+ +         +I D+  + +   L  
Sbjct: 283 VAKIPGINPKTTATREIRKVAVIGSGTMGGGIA-MNFINVGIPTQILDLNGEALERGLGV 341

Query: 357 NYKLFDKQRQRKILTKAQLQAQMSQLSGGTGFVGFDRCDVVIEAVFEDLKLKQQMVADIE 416
             K ++   ++  L++AQL  +M+ LSG T +      D+VIEAVFE +++K+Q+   ++
Sbjct: 342 IRKNYEYTLKKGKLSQAQLDERMALLSGTTDYADIADVDLVIEAVFEKMEIKKQVFKTLD 401

Query: 417 ANAKPTTIFATNTSSLPIHQIASQAQRPQNIVGLHYFSPVEKMPLVEVIPHATTSDETIA 476
           A  KP  I ATNTS+L + +IA++  RPQ+++GLH+FSP   M L+E++    T+ + + 
Sbjct: 402 ATCKPGAILATNTSTLDVDEIAAETSRPQDVLGLHFFSPANVMRLLEIVRANKTAPDALL 461

Query: 477 TVVTLARKQGKTPIVVKDCAGFYVNRILAPYMNEAAQVLMAGEPIEKLDAALLDFGFPVG 536
           T V LA++  K P+V   C GF  NR    Y+ E+  +++ G    ++D    +FG P+G
Sbjct: 462 TTVQLAQRIKKVPVVSGVCWGFIGNRATDSYLRESMSLILEGASPAQIDKVHTEFGMPMG 521

Query: 537 PITLLDEVGVDIGAKIMPILVKELGPRFQ---GPDVFDVLLK---DNRKGRKSGKGFYTY 590
             +++D  G+D+G     IL +E    F     P  F +L K     R G+K+G+G Y Y
Sbjct: 522 LPSMVDLAGIDVG-----ILTREDRKAFTTDLDPSHFAILHKLYAKQRYGQKTGRGLYIY 576

Query: 591 KGSKKKEVDKSVYKL----------LKLTPESKLNDKEIAMRCLLPMLNEAVRCLDEGII 640
           +G  K+E D  V +L           + +PE +++D+EI  R + P++NE  R L+EGI 
Sbjct: 577 EGRDKQE-DPEVLELAAEAAKEFGVTRRSPE-QISDQEILERTIYPIINEGARILEEGIA 634

Query: 641 RSARDGDMGAIFGIGFPPFLGGPFRYMDTLGLTKVVEMMNQHTE 684
             A D D+   +G GFP F GGP +Y D +GL +V+  +N++ +
Sbjct: 635 LRASDIDIVLAYGFGFPIFRGGPMQYADEIGLERVLTALNKYRD 678