Pairwise Alignments

Query, 708 a.a., fatty acid oxidation complex subunit alpha FadJ from Vibrio cholerae E7946 ATCC 55056

Subject, 706 a.a., multifunctional fatty acid oxidation complex subunit alpha (RefSeq) from Shewanella loihica PV-4

 Score =  773 bits (1995), Expect = 0.0
 Identities = 407/706 (57%), Positives = 513/706 (72%), Gaps = 4/706 (0%)

Query: 4   NNAFQLSFDEQHYAWLAIDVPGEKMNTLQAAFAEEMQAVFATLNEKRGQIKGLIIHSLKP 63
           + +F L+  +   A L +DVPGE MNTL+A F  E+  + A +    G I+G++I S K 
Sbjct: 2   DKSFTLNRLDNGIAVLTMDVPGETMNTLRAEFGPEICEMLAEIKADAG-IRGVVIISGKK 60

Query: 64  DNFIAGADVRMLEACQSVHEAQALASQGQQMFQQLADLPFPVVAAIHGPCLGGGLELALA 123
           D+F+AGAD+ ML+AC +  +A+ L+ QG ++F  L  L  PVVAAI+G CLGGGLELALA
Sbjct: 61  DSFVAGADISMLDACATAEDARELSKQGHEVFFALESLSIPVVAAINGACLGGGLELALA 120

Query: 124 CDYRVCTEDEVTRLGLPEVMLGLLPGSGGTQRLPRLIGLLPALDLILTGKQLRAKKAKKL 183
           C  RVCT+   T LGLPEV LGLLPG GGTQRLPRL+G+  +LD++LTGKQLRAK+A K+
Sbjct: 121 CHQRVCTDSNKTMLGLPEVQLGLLPGGGGTQRLPRLVGIAKSLDMMLTGKQLRAKQALKM 180

Query: 184 GVVDACVPHSVLLDVAKRLLEEKGHKKRAQVTLPIKEKLLANTDLGRKLIFDQAAKKTQQ 243
           G+VD  VP S+LL  A  +    G +   +  L   EKLL  T +GR +IF+QA K+  +
Sbjct: 181 GLVDDVVPESILLQTAIEMALA-GARPAKKPKLSTVEKLLEGTPVGRNIIFEQALKQVNK 239

Query: 244 KTRGNYPAAQAILEVIQYGLEKGMHAGLEYEAKRFAELVMTRESKALRSIFFATTEMKKD 303
           KT+GNYPA + I++ ++ G+ KG+  GLE EA+ F +LV++ ES+ALRSIFFATTEMKK+
Sbjct: 240 KTQGNYPAPEKIIDCVRQGVTKGIVKGLEVEAQHFGDLVVSNESEALRSIFFATTEMKKE 299

Query: 304 LGA-DAKPAPVAAVGVLGGGLMGAGISHVTVAKAKTSVRIKDVANDGVLNALNYNYKLFD 362
            GA D  P  V  V VLGGGLMG GI+ VT  KAK  VR+KD++  G+ NAL Y YKL  
Sbjct: 300 SGAGDVSPKAVNKVMVLGGGLMGGGIASVTTTKAKIPVRVKDISEIGLSNALAYAYKLLA 359

Query: 363 KQRQRKILTKAQLQAQMSQLSGGTGFVGFDRCDVVIEAVFEDLKLKQQMVADIEANAKPT 422
           K  +R+ +T A     M+ ++  T + G    D+V+EAVFEDL LK QMV D+E      
Sbjct: 360 KGVKRRHMTPAVRDNLMALMTTTTEYKGIKDADMVVEAVFEDLNLKHQMVKDVERECGEH 419

Query: 423 TIFATNTSSLPIHQIASQAQRPQNIVGLHYFSPVEKMPLVEVIPHATTSDETIATVVTLA 482
           TIFA+NTSSLPI QIA  A+RP+N++GLHYFSPVEKMPLVEVI H  TS +TIAT V  A
Sbjct: 420 TIFASNTSSLPIKQIAEAAERPENVIGLHYFSPVEKMPLVEVIAHDKTSPQTIATTVAFA 479

Query: 483 RKQGKTPIVVKDCAGFYVNRILAPYMNEAAQVLMAGEPIEKLDAALLDFGFPVGPITLLD 542
           RKQGKTPIVVKD AGFYVNRILA YMNEAA +L+ G+ ++ LD AL+ FGFPVGP+TLLD
Sbjct: 480 RKQGKTPIVVKDGAGFYVNRILALYMNEAANLLLEGQSVDHLDKALVKFGFPVGPMTLLD 539

Query: 543 EVGVDIGAKIMPILVKELGPRFQGPDVFDVLLKDNRKGRKSGKGFYTYKG-SKKKEVDKS 601
           EVG+D+GAKI PIL KELG RF+ P  FD LL D+RKGRK+GKGFY Y   SKKK VD+S
Sbjct: 540 EVGIDVGAKISPILEKELGERFKAPAAFDKLLADDRKGRKNGKGFYQYGAKSKKKLVDES 599

Query: 602 VYKLLKLTPESKLNDKEIAMRCLLPMLNEAVRCLDEGIIRSARDGDMGAIFGIGFPPFLG 661
           VY +L LTP +      +A RC++ MLNEAVRCL+EGII S RDGD+GAIFGIGFPPFLG
Sbjct: 600 VYGVLGLTPGADGEPIALAERCVVQMLNEAVRCLEEGIIASPRDGDIGAIFGIGFPPFLG 659

Query: 662 GPFRYMDTLGLTKVVEMMNQHTEKYGERFAPCDGLLTRAGLGEKFY 707
           GPFRYMD+LG   +VE + ++ +++G+RFAPCD L+  A  G KFY
Sbjct: 660 GPFRYMDSLGAKHLVETLKRYQDQFGDRFAPCDRLVEMAESGSKFY 705