Pairwise Alignments

Query, 708 a.a., fatty acid oxidation complex subunit alpha FadJ from Vibrio cholerae E7946 ATCC 55056

Subject, 716 a.a., multifunctional fatty acid oxidation complex subunit alpha (RefSeq) from Shewanella loihica PV-4

 Score =  402 bits (1034), Expect = e-116
 Identities = 259/723 (35%), Positives = 387/723 (53%), Gaps = 38/723 (5%)

Query: 8   QLSFDEQHYAWLAIDVPGEKMNTLQAAFAEEMQAVFATLNEKRGQIKGLIIHSLKPDNFI 67
           Q+   E + A L  +  G  +N         +      L + +G +KGL++ S K D FI
Sbjct: 9   QVELLEDNIARLCFNAEGS-VNKFDRETLNSLNDALDALAQTQG-VKGLMLTSGK-DAFI 65

Query: 68  AGADVRMLEA--CQSVHEAQALASQGQQMFQQLADLPFPVVAAIHGPCLGGGLELALACD 125
            GAD+        Q  +  Q       ++F +L DLPFP ++AI G  LGGG E  LA D
Sbjct: 66  VGADITEFLGLFAQDDNVLQGWLEDANKVFNKLEDLPFPTISAIKGFALGGGCETILATD 125

Query: 126 YRVCTEDEVTRLGLPEVMLGLLPGSGGTQRLPRLIGLLPALDLILTGKQLRAKKAKKLGV 185
            R+   D   R+GLPE  LG++PG GGT RLPR+IG   AL+ I TGK  R + A K+G 
Sbjct: 126 LRIA--DTSARIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITTGKDQRPEAALKVGA 183

Query: 186 VDACVPHSVLLDVAKRLLEE----------KGHKKRAQVTLPIKEKLLANTDLGRKLIFD 235
           +DA V   +L   A ++L++          +  +K + +TLP  E +++     + ++F 
Sbjct: 184 IDAVVAPELLETAACQMLQDAISEKIDWQARRQRKLSPLTLPKLEAMMSFAT-AKGMVFK 242

Query: 236 QAAKKTQQKTRGNYPAAQAILEVIQYGLEKGMHAGLEYEAKRFAELVMTRESKALRSIFF 295
            A K        +YPA  A++EVI+          L+ E + F +L  T  +KAL  IF 
Sbjct: 243 VAGK--------HYPAPMAVVEVIEKAALSERAEALQVEHQAFIKLAKTDVAKALIGIFL 294

Query: 296 ATTEMKKDLGADAKPAP-VAAVGVLGGGLMGAGISHVTVAKAKTSVRIKDVANDGVLNAL 354
               +K      AK A  V +  VLG G+MG GI++ + +K  T + +KD+    +   L
Sbjct: 295 NDQLVKGKAKKAAKQAQAVNSAAVLGAGIMGGGIAYQSASKG-TPIVMKDINQAALDLGL 353

Query: 355 NYNYKLFDKQRQRKILTKAQLQAQMSQLSGGTGFVGFDRCDVVIEAVFEDLKLKQQMVAD 414
           N   KL   Q  R   T A++   ++ ++    +    + DVV+EAV E  K+K  ++A+
Sbjct: 354 NEAAKLLTAQINRGRSTPAKMAGVLNNITATLDYNALKQADVVVEAVVEHPKVKATVLAE 413

Query: 415 IEANAKPTTIFATNTSSLPIHQIASQAQRPQNIVGLHYFSPVEKMPLVEVIPHATTSDET 474
           +E       I  +NTS++ I+ +A   Q+P+   G+H+F+PV KMPLVEVI    +S+ET
Sbjct: 414 VEQVVGEDAIITSNTSTISINLLAKSLQKPERFCGMHFFNPVHKMPLVEVIRGEHSSEET 473

Query: 475 IATVVTLARKQGKTPIVVKDCAGFYVNRILAPYMNEAAQVLMAGEPIEKLDAAL-LDFGF 533
           +A+VV  A K GKTPIVV DC GF+VNR+L PY    + +L  G     +D  +   FG+
Sbjct: 474 VASVVAYAAKMGKTPIVVNDCPGFFVNRVLFPYFAGFSGLLEDGADFAAIDKVMEKQFGW 533

Query: 534 PVGPITLLDEVGVDIGAKIMPILVKELGPRF--QGPDVFDVLLKDNRKGRKSGKGFYTY- 590
           P+GP  LLD VG+D G     ++ +    R   +G D  DV+ + +R G+K+GKGFY Y 
Sbjct: 534 PMGPAYLLDVVGLDTGHHAQAVMAEGFPDRMAKEGKDAIDVMFEADRFGQKNGKGFYQYS 593

Query: 591 ---KGSKKKEVDKSVYKLL--KLTPESKLNDKEIAMRCLLPMLNEAVRCLDEGIIRSARD 645
              +G  KKEVD   Y+LL      + + +  EI  R ++PM+ E VRCL+EGII +  +
Sbjct: 594 VDRRGKPKKEVDPLSYELLGNAFGEQKEFSSDEIIARTMIPMIIETVRCLEEGIIATPAE 653

Query: 646 GDMGAIFGIGFPPFLGGPFRYMDTLGLTKVVEMMNQHTEKYGERFAPCDGLLTRAGLGEK 705
            DMG ++G+GFPPF GG FRY+DTLG+   V + +Q+    G  +   D +   A     
Sbjct: 654 ADMGLVYGLGFPPFRGGVFRYLDTLGVANFVALADQYAH-LGGLYQVTDKMRELAATNGS 712

Query: 706 FYP 708
           +YP
Sbjct: 713 YYP 715