Pairwise Alignments

Query, 708 a.a., fatty acid oxidation complex subunit alpha FadJ from Vibrio cholerae E7946 ATCC 55056

Subject, 707 a.a., fatty oxidation complex, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  770 bits (1988), Expect = 0.0
 Identities = 403/707 (57%), Positives = 508/707 (71%), Gaps = 12/707 (1%)

Query: 7   FQLSFDEQHYAWLAIDVPGEKMNTLQAAFAEEMQAVFATLNEKRGQIKGLIIHSLKPDNF 66
           F L+  E   A L +DVPGE MNTL+A F  E+  + + + ++   I+GL++ S K D+F
Sbjct: 7   FNLTRREDGIAILTMDVPGETMNTLKAEFGPEISEILSEI-KRDSSIRGLVLISGKKDSF 65

Query: 67  IAGADVRMLEACQSVHEAQALASQGQQMFQQLADLPFPVVAAIHGPCLGGGLELALACDY 126
           +AGAD+ ML+ACQ+  +A+AL+ QG  +F +L  L  PVVAAIHG CLGGGLELALAC  
Sbjct: 66  VAGADISMLDACQTAGDAKALSQQGHVVFNELEALNIPVVAAIHGACLGGGLELALACHQ 125

Query: 127 RVCTEDEVTRLGLPEVMLGLLPGSGGTQRLPRLIGLLPALDLILTGKQLRAKKAKKLGVV 186
           RVC++D  T LG+PEV LGLLPG GGTQRLPRL+G+  ALD++LTGKQ+R K+A K+G+V
Sbjct: 126 RVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQALKMGLV 185

Query: 187 DACVPHSVLLDVAKRLLEEKGHKKRAQVTLPIKE----KLLANTDLGRKLIFDQAAKKTQ 242
           +  VP ++LL  A  +          Q+  P+K+    +LL  T  GR +IFDQAAK+  
Sbjct: 186 NDVVPQTILLQTAVEMA-----LAGKQIAKPVKKSLVNQLLEGTGFGRNIIFDQAAKQVA 240

Query: 243 QKTRGNYPAAQAILEVIQYGLEKGMHAGLEYEAKRFAELVMTRESKALRSIFFATTEMKK 302
           +KT+GNYPA   I++ ++ G+ KGM  GLE EA  FAELV+++ES+ALRSIFFATTEMKK
Sbjct: 241 KKTQGNYPAPAKIIDCVRQGIAKGMQKGLEVEASHFAELVVSKESEALRSIFFATTEMKK 300

Query: 303 DLGAD-AKPAPVAAVGVLGGGLMGAGISHVTVAKAKTSVRIKDVANDGVLNALNYNYKLF 361
           + GA+ A P  V    +LGGGLMG GI+ VT  KAK   R+KD+   G+ NAL+Y YKL 
Sbjct: 301 ETGAEGATPRKVKKAVILGGGLMGGGIASVTTTKAKIPARVKDINEKGLSNALSYAYKLL 360

Query: 362 DKQRQRKILTKAQLQAQMSQLSGGTGFVGFDRCDVVIEAVFEDLKLKQQMVADIEANAKP 421
           DK  +R+ +T A     M+ ++  T + G    D+V+EAVFEDL LK QMV DIE     
Sbjct: 361 DKGVKRRHMTPAARDNLMALMTTTTEYKGVKDADIVVEAVFEDLALKHQMVKDIERECGE 420

Query: 422 TTIFATNTSSLPIHQIASQAQRPQNIVGLHYFSPVEKMPLVEVIPHATTSDETIATVVTL 481
            TIFA+NTSSLPI QIA  A RP+N++GLHYFSPVEKMPLVEVI HA TS ETIAT V  
Sbjct: 421 HTIFASNTSSLPIGQIAQAASRPENVIGLHYFSPVEKMPLVEVIAHAKTSPETIATTVAF 480

Query: 482 ARKQGKTPIVVKDCAGFYVNRILAPYMNEAAQVLMAGEPIEKLDAALLDFGFPVGPITLL 541
           ARKQGKTPIVV+D AGFYVNRILA YMNEAAQ+L+ G+ +E LD AL+ FGFPVGPITLL
Sbjct: 481 ARKQGKTPIVVQDGAGFYVNRILALYMNEAAQLLLEGQSVEHLDKALVKFGFPVGPITLL 540

Query: 542 DEVGVDIGAKIMPILVKELGPRFQGPDVFDVLLKDNRKGRKSGKGFYTY-KGSKKKEVDK 600
           DEVG+D+GAKI PIL KELG RF+ P  FD LL D+RKGRK+GKGFY Y   SKKK VD+
Sbjct: 541 DEVGIDVGAKISPILEKELGERFKAPAAFDKLLSDDRKGRKNGKGFYQYGAASKKKAVDE 600

Query: 601 SVYKLLKLTPESKLNDKEIAMRCLLPMLNEAVRCLDEGIIRSARDGDMGAIFGIGFPPFL 660
           +VY +L + P        +A RC++ MLNEAVRCLD GII S RDGD+GAIFGIGFPPFL
Sbjct: 601 TVYGVLGIKPGVDKEMSAVAERCVVQMLNEAVRCLDAGIIASPRDGDIGAIFGIGFPPFL 660

Query: 661 GGPFRYMDTLGLTKVVEMMNQHTEKYGERFAPCDGLLTRAGLGEKFY 707
           GGPF Y+DTLG   +V+++ ++  +YG+RF PC  L   A    +F+
Sbjct: 661 GGPFHYIDTLGADNLVKILERYQTQYGDRFEPCQRLKAMAAEKARFF 707