Pairwise Alignments

Query, 708 a.a., fatty acid oxidation complex subunit alpha FadJ from Vibrio cholerae E7946 ATCC 55056

Subject, 716 a.a., fatty oxidation complex, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  407 bits (1047), Expect = e-118
 Identities = 258/704 (36%), Positives = 384/704 (54%), Gaps = 41/704 (5%)

Query: 8   QLSFDEQHYAWLAIDVPGEKMNTLQAAFAEEMQAVFATLNEKRGQIKGLIIHSLKPDNFI 67
           Q+   E + A L  + PG  +N         + A   ++ ++   I+ L++ S K D FI
Sbjct: 9   QVELLEDNIAKLCFNAPGS-VNKFDRETLASLDAALDSIKQQ-SNIQALVLTSGK-DTFI 65

Query: 68  AGADVRMLEACQSVHEAQALA--SQGQQMFQQLADLPFPVVAAIHGPCLGGGLELALACD 125
            GAD+       +  +A  L+   Q   +F +L DLPFP  +AI G  LGGG E  LA D
Sbjct: 66  VGADITEFLGLFAQDDAVLLSWVEQANAVFNKLEDLPFPTASAIKGFALGGGCETILATD 125

Query: 126 YRVCTEDEVTRLGLPEVMLGLLPGSGGTQRLPRLIGLLPALDLILTGKQLRAKKAKKLGV 185
           +R+   D   ++GLPE  LG++PG GGT RLPR+IG   AL+ I TG + RA+ A K+G 
Sbjct: 126 FRIA--DTTAKIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITTGNEQRAEDALKVGA 183

Query: 186 VDACVPHSVLLDVAKRLLEE----------KGHKKRAQVTLPIKEKLLANTDLGRKLIFD 235
           VDA V    L   A ++L++          +  +K + +TLP  E +++ T   + ++F 
Sbjct: 184 VDAVVAPEALEVAAIQMLKDAVAEKLDWQARRQRKLSPLTLPKLEAMMSFTT-AKGMVFS 242

Query: 236 QAAKKTQQKTRGNYPAAQAILEVIQYGLEKGMHAGLEYEAKRFAELVMTRESKALRSIFF 295
            A K        +YPA  A + V++    KG    L+ E + F +L  T  +KAL  IF 
Sbjct: 243 VAGK--------HYPAPMAAVNVVEQAATKGRSDALQIEHQAFIKLAKTDVAKALIGIFL 294

Query: 296 ATTEMK---KDLGADAKPAPVAAVGVLGGGLMGAGISHVTVAKAKTSVRIKDVANDGVLN 352
               +K   K  G  AK    AAV  LG G+MG GI++ + +K  T + +KD+A   +  
Sbjct: 295 NDQFVKGKAKKAGKLAKAVNSAAV--LGAGIMGGGIAYQSASKG-TPIVMKDIAQPALDL 351

Query: 353 ALNYNYKLFDKQRQRKILTKAQLQAQMSQLSGGTGFVGFDRCDVVIEAVFEDLKLKQQMV 412
            LN   KL   Q  R   T  ++   ++ ++    +      DVV+EAV E  K+K Q++
Sbjct: 352 GLNEAAKLLSAQVARGRSTPEKMAKVLNNITPALEYAPVKHADVVVEAVVEHPKVKAQVL 411

Query: 413 ADIEANAKPTTIFATNTSSLPIHQIASQAQRPQNIVGLHYFSPVEKMPLVEVIPHATTSD 472
           A++E       I A+NTS++ I  +A   ++P+   G+H+F+PV KMPLVEVI    +S+
Sbjct: 412 AEVEQYVSEDAIIASNTSTISISLLAKSMKKPERFCGMHFFNPVHKMPLVEVIRGEHSSE 471

Query: 473 ETIATVVTLARKQGKTPIVVKDCAGFYVNRILAPYMNEAAQVLMAGEPIEKLDAAL-LDF 531
           ETIA+VV  A K GKTPIVV DC GF+VNR+L PY      +L  G     +D  +   F
Sbjct: 472 ETIASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLAEGGDFAAIDKVMEKQF 531

Query: 532 GFPVGPITLLDEVGVDIGAKIMPILVKELGPRF--QGPDVFDVLLKDNRKGRKSGKGFYT 589
           G+P+GP  LLD VG+D G     ++ +    R    G D  DV+ ++ R G+K+GKGFY 
Sbjct: 532 GWPMGPAYLLDVVGLDTGHHAQAVMAEGFPDRMGKSGNDAIDVMFENKRLGQKNGKGFYA 591

Query: 590 Y----KGSKKKEVDKSVYKLLKLT--PESKLNDKEIAMRCLLPMLNEAVRCLDEGIIRSA 643
           Y    +G  KK+VD + Y+LLK     +   +  EI  R ++PM+ E VRCL+EGI+ S 
Sbjct: 592 YSVDSRGKPKKDVDPTSYELLKAAFGEQKAFDADEIIARTMIPMIIETVRCLEEGIVASP 651

Query: 644 RDGDMGAIFGIGFPPFLGGPFRYMDTLGLTKVVEMMNQHTEKYG 687
            + DMG ++G+GFPPF GG FRY+DT+G+   V + +++    G
Sbjct: 652 AEADMGLVYGLGFPPFRGGVFRYLDTMGVANFVALADKYAHLGG 695