Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 168 a.a., RNA polymerase sigma-54 factor RpoN from Pseudomonas fluorescens FW300-N2E2

 Score = 60.5 bits (145), Expect = 2e-14
 Identities = 47/148 (31%), Positives = 74/148 (50%), Gaps = 2/148 (1%)

Query: 38  LYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITILRRE--NARRFERK 95
           L R+A  L ++ S A+DLVQ    RA    +    +   +AWL +IL R+  ++ R  R+
Sbjct: 15  LRRFAVSLTRNPSNADDLVQMCLERALSKWNDKRPDGDLRAWLFSILYRQFLDSHRRSRR 74

Query: 96  QFDLVDIDDHDYEAKYSDDEHHQNEWLQRQILKLDVEYRELLFLQVVGGFSGEEIADILS 155
              +++      +A  S +     +   +   +L  E R LL    V G S ++IADIL 
Sbjct: 75  YARMLEFFTGRDDAHPSAERSVIAQSSLQAFDQLTTEQRALLLWVSVEGLSYQQIADILG 134

Query: 156 LNKNTVMTRLFRARNQLKEMMDGSEHYP 183
           +   TVM+RL RAR  L+++ DG    P
Sbjct: 135 VPTGTVMSRLSRARQALRQLSDGEVTRP 162