Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 186 a.a., RNA polymerase sigma factor, sigma-70 family from Pseudomonas stutzeri RCH2

 Score = 67.4 bits (163), Expect = 1e-16
 Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 10/175 (5%)

Query: 5   LNLFGKKVSQRPVNNDMDRQRKYEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAW 64
           +N   +++ Q+ V  D   ++ + ALVRA+   ++ +   L      A DL QET +RA+
Sbjct: 1   MNECEQELIQQAVRGD---RQAFGALVRAHQARVFHFIRRLLGSTDEAADLTQETFIRAY 57

Query: 65  KSLDSLLDEKAAKAWLITILRRENARRFERKQFDLVDIDDHDYEA---KYSDDEHHQN-- 119
           ++L     E   + WL+ I R        ++Q  +V   D   E      S     Q+  
Sbjct: 58  QALPRWRPEARLQTWLLQIARNAALDLLRQRQRHVVLAADEQAEPIDPAPSPLRRLQSAR 117

Query: 120 --EWLQRQILKLDVEYRELLFLQVVGGFSGEEIADILSLNKNTVMTRLFRARNQL 172
             E L+R + +L  E RE+L L+ V G S +E+A  L LN  TV +RL RAR  L
Sbjct: 118 DLEMLERLLARLPHEQREILLLREVEGLSYDELAATLQLNAGTVKSRLARAREAL 172