Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 218 a.a., RNA polymerase sigma factor RpoE from Synechococcus elongatus PCC 7942

 Score = 67.8 bits (164), Expect = 1e-16
 Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 17/169 (10%)

Query: 27  YEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWL---ITI 83
           +  LVR Y   + R  Y L  D     DLVQE  +R +++L +L + ++ K WL   +T 
Sbjct: 45  FTELVRRYQNHVERLIYHLAPDWEDRADLVQEVWIRVYRNLKNLQEPRSFKGWLSRIVTN 104

Query: 84  LRRENARRFERKQ----FD---LVDIDDHDYEAKYS----DDEHHQNEW---LQRQILKL 129
           L  +  RR +R+Q     D   L+  D  D+E        D+E  + E+   L+R I  L
Sbjct: 105 LFYDELRRRKRRQPALSLDAPRLIGNDQLDWELPTEQAGPDEELEKQEFYNELRRAIAGL 164

Query: 130 DVEYRELLFLQVVGGFSGEEIADILSLNKNTVMTRLFRARNQLKEMMDG 178
              +R  + L+ + G + EEIA    ++  TV +R+ RAR +L++ + G
Sbjct: 165 PESFRTTIVLREIEGLAYEEIAAATGVSLGTVKSRIARARQRLQDQLSG 213