Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 184 a.a., RNA polymerase sigma factor from Sinorhizobium meliloti 1021

 Score = 67.4 bits (163), Expect = 1e-16
 Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 3/128 (2%)

Query: 52  AEDLVQETCLRAWKSLDSLLDEKAAKAWLITILRRENARRFERKQFDLVDIDDHDYEAKY 111
           A+DLVQ+T ++AW   D        KAWL TILR E   +  ++  ++ D D H  E   
Sbjct: 33  ADDLVQDTIMKAWAKQDHFEIGTNMKAWLFTILRNELYSQMRKRGREVQDSDGHLTETLA 92

Query: 112 SDDEHHQNEWLQ---RQILKLDVEYRELLFLQVVGGFSGEEIADILSLNKNTVMTRLFRA 168
              E + +  LQ   R + +L  + RE + L    GFS EE A I      T+ +R+ RA
Sbjct: 93  HHPEQYGSLDLQDFRRALEQLPPDQREAIILVGASGFSYEEAATICGCALGTIKSRVNRA 152

Query: 169 RNQLKEMM 176
           R +L+E++
Sbjct: 153 RQRLQEIL 160