Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 184 a.a., RNA polymerase sigma factor protein from Sinorhizobium meliloti 1021

 Score = 52.0 bits (123), Expect = 6e-12
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 17/148 (11%)

Query: 38  LYRYAYWLCKDRSIAEDLVQETCLRA------WKSLDSLLDEKAAKAWLITILRR--ENA 89
           L RY+  L       EDL+Q+   +       W+ ++        +AW  TI+     N 
Sbjct: 33  LRRYSRSLAHSDPDGEDLLQDCVEKVLARREQWRGVN-------LRAWAFTIMTNLFRNG 85

Query: 90  RRFERKQFDLVDIDDH-DYEAKYSDDEHHQNEWLQRQILKLDVEYRELLFLQVVGGFSGE 148
            R  R Q   V+ D+     A+  + +  + + L R + +L  + R +L L V+ G+  +
Sbjct: 86  HR-RRAQHPEVEFDEALGLRAEEDNADPLERQRLMRGLERLSADNRAVLMLVVIEGYRYQ 144

Query: 149 EIADILSLNKNTVMTRLFRARNQLKEMM 176
           ++AD++ +   TVM+RL RAR QL E M
Sbjct: 145 DVADMMEIPIGTVMSRLSRARRQLAEAM 172