Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 180 a.a., RNA polymerase ECF sigma factor from Sinorhizobium meliloti 1021

 Score = 63.2 bits (152), Expect = 3e-15
 Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 6/148 (4%)

Query: 33  AYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITILRR---ENA 89
           A+  +L R+A  LC  R +A+DLVQ  C RA  S +         AW+  ILR    +  
Sbjct: 14  AFLPNLRRFAISLCGSRDVADDLVQSACERALASAERFEPGTRFDAWIFRILRNLWIDQV 73

Query: 90  RRFERKQFDLVDIDDHDYEAKYSDDEHHQNEWLQ---RQILKLDVEYRELLFLQVVGGFS 146
           RR +         + HD      + E      L+     I +L  E RE++ L  V   S
Sbjct: 74  RRQKTAGVQDDITERHDIAGSSGERETEARLTLKTVAEAITELPDEQREVVLLVCVEELS 133

Query: 147 GEEIADILSLNKNTVMTRLFRARNQLKE 174
             E AD++ +   TVM+RL RAR  L E
Sbjct: 134 YREAADVMGIPIGTVMSRLMRARRSLAE 161