Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 227 a.a., RNA polymerase sigma factor from Sinorhizobium meliloti 1021

 Score = 72.0 bits (175), Expect = 7e-18
 Identities = 58/179 (32%), Positives = 85/179 (47%), Gaps = 21/179 (11%)

Query: 16  PVNNDMDRQRKYEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKA 75
           P+  D+ R   + A+++A++R LYR A  + ++ S AED++QE  +RA+   +    + A
Sbjct: 14  PLAQDLAR---FRAIMQAHNRKLYRIARSILRNDSDAEDVLQEAYVRAFTRFEDFRGDAA 70

Query: 76  AKAWLITILRRENARRFE--RKQFDLVDIDDHDYEAKY------SDDEHHQNEWLQRQIL 127
              WL  I+  E   R    R+Q  L        EA+       S     +    QRQIL
Sbjct: 71  ITTWLARIVINEALGRLRKGRRQMRLAKYMRQSQEAEIIAFPLNSGISDPEKTMAQRQIL 130

Query: 128 KLDVE---------YRELLFLQVVGGFSGEEIADILSLNKNTVMTRLFRARNQLKEMMD 177
            L VE         YR +  L+V+ G   EE A +L L   T  TRL RAR  LKE ++
Sbjct: 131 DL-VERLTDDLPDTYRTVFVLRVIEGLDNEEAAALLGLKPETARTRLHRARRILKEQLE 188