Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 184 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella amazonensis SB2B

 Score = 64.3 bits (155), Expect = 1e-15
 Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 7/154 (4%)

Query: 27  YEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITI-LR 85
           +EAL + +H+ +Y  A  L  + S+A++++QE+ +R W  L     E     W  ++ L 
Sbjct: 33  FEALYQRHHKRIYALALRLGGEPSLADEILQESFVRLWHKLPQFRGESQFGTWFYSLALN 92

Query: 86  RENARRFERKQFDLVDIDDHDYEAKYSDDEHHQNE---WLQRQILKLDVEYRELLFLQVV 142
           +  +   + + F    + D   +      EH QN+    L R I++L    R +  L  V
Sbjct: 93  QALSTLKQHRSFWARMVPDWQIQ---DAPEHSQNDDGLLLDRLIVRLPERARLVFVLFAV 149

Query: 143 GGFSGEEIADILSLNKNTVMTRLFRARNQLKEMM 176
            GFS EE+A +L ++  T      RAR  +KEM+
Sbjct: 150 EGFSHEEVASLLGISTGTSKAHYHRARELMKEML 183