Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 278 a.a., Sigma-24 (FecI) (NCBI) from Rhodospirillum rubrum S1H

 Score = 54.3 bits (129), Expect = 2e-12
 Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 11/144 (7%)

Query: 41  YAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITILR-------RENARRFE 93
           +A  L  DR++A+DL QE   RA  + DS       +AW+ TI+R       R   RR E
Sbjct: 109 FARSLTDDRALADDLAQEAATRALANRDSYHAGTNFRAWIFTIVRNCFYSEHRRKWRRME 168

Query: 94  RKQFDLVDIDDHDYEAKYSDDEHHQNEWLQRQILKLDVEYRELLFLQVVGGFSGEEIADI 153
           +   D +        A  + +   + E  +R    L  E RE L L    GF  ++ A+I
Sbjct: 169 KGNEDAM----IRAGAPETQESGLRMEDFKRGFTLLSEEQREALVLVGACGFDYQQAAEI 224

Query: 154 LSLNKNTVMTRLFRARNQLKEMMD 177
                 T+ +R+ RAR +L+ M+D
Sbjct: 225 AGCAVGTMKSRVSRARAELRTMLD 248