Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 181 a.a., RNA polymerase sigma factor 70 (ECF15 subgroup, ECF26 subgroup) from Phaeobacter inhibens DSM 17395

 Score = 68.9 bits (167), Expect = 5e-17
 Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 3/146 (2%)

Query: 41  YAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITILRRE--NARRFERKQFD 98
           +A  L ++ ++A+DLVQ+T ++AW +++   +    +AWL TILR    + RR  R++ +
Sbjct: 18  FAISLTRNTAMADDLVQDTLVKAWTNIEKFEEGSNMRAWLFTILRNTYYSLRRKRRREVE 77

Query: 99  LVD-IDDHDYEAKYSDDEHHQNEWLQRQILKLDVEYRELLFLQVVGGFSGEEIADILSLN 157
             D +       K   D             +L+ E RE L L   GGFS EE A+   + 
Sbjct: 78  DADGVLSEQLSQKPDHDGRLNMRDFNTAFAQLNDEQREALVLVGAGGFSYEEAAETCGVK 137

Query: 158 KNTVMTRLFRARNQLKEMMDGSEHYP 183
             T+ +R+ R R +L E+M   E  P
Sbjct: 138 VGTIKSRVNRGRARLAELMHLDEDEP 163