Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 208 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score = 62.0 bits (149), Expect = 7e-15
 Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 16/179 (8%)

Query: 10  KKVSQRPVNNDMDRQRKYEALVRAYHRDLYRYAYWLC----KDRSIAEDLVQETCLRAWK 65
           +K  Q  + N+ D Q+       A ++  Y +A  +C     DR  A  ++ +   +A+K
Sbjct: 13  QKHIQGCIRNERDSQK-------ALYKHFYSFAMGICLRYANDRLDAAGILNDGFFKAFK 65

Query: 66  SLDSLLDEKAAKAWLITILRRE--NARRFERKQFDLVDIDDHDYEAKYSD--DEHHQNEW 121
           ++      KA   WL  I+     +  R   K  D VDI DH+  A+ S   D+   ++ 
Sbjct: 66  NITKYEPSKAFLPWLGRIITNTAIDYYRANLKFADHVDILDHENIAQVSSVYDKLAYHDL 125

Query: 122 LQRQILKLDVEYRELLFLQVVGGFSGEEIADILSLNKNTVMTRLFRARNQLKEMMDGSE 180
           L   + KL   YR +  L  + G++ EEIA++L ++  T  + LF+AR +L+EM+  +E
Sbjct: 126 LAL-VQKLSAGYRTVFNLFAIDGYTHEEIAEMLGISVGTSKSNLFKARQKLQEMLKATE 183