Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 187 a.a., RNA polymerase sigma factor (RefSeq) from Shewanella loihica PV-4

 Score =  223 bits (567), Expect = 2e-63
 Identities = 112/180 (62%), Positives = 141/180 (78%), Gaps = 3/180 (1%)

Query: 4   ILNLFGKKVSQRPVNNDM-DRQRKYEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLR 62
           + ++   K  ++ VN DM ++QR+Y++LVRA H DL+RYA+WLC D+ IAED+ QET LR
Sbjct: 1   MFSVIRNKKPKKSVNRDMLNKQRRYDSLVRALHGDLFRYAFWLCGDKHIAEDITQETFLR 60

Query: 63  AWKSLDSLLDEKAAKAWLITILRRENARRFERKQFDLVDIDDHDY--EAKYSDDEHHQNE 120
           AW+SL+SL D+KAAKAWLITILRRENARRFERKQFD  D++  D       S +E  +  
Sbjct: 61  AWRSLESLKDDKAAKAWLITILRRENARRFERKQFDYSDVEQADIADHISSSSEESMEQH 120

Query: 121 WLQRQILKLDVEYRELLFLQVVGGFSGEEIADILSLNKNTVMTRLFRARNQLKEMMDGSE 180
            L+RQI KL+ EYRE L LQV+GGFSGEEIADIL LN+NTVMTRLFRARNQLKE++D ++
Sbjct: 121 MLRRQIAKLEAEYREPLILQVIGGFSGEEIADILDLNRNTVMTRLFRARNQLKEILDDTQ 180