Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 199 a.a., RNA polymerase sigma factor RpoE from Dechlorosoma suillum PS

 Score = 59.7 bits (143), Expect = 3e-14
 Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 21/189 (11%)

Query: 10  KKVSQRPVNNDMDRQRK-YEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLD 68
           +++ Q+ V       +K +E LV  Y R L R      +D +  ED+ QE  ++A+++L 
Sbjct: 4   REIDQKLVERAQSGDKKAFELLVAKYQRKLGRLLSRFIRDPAEVEDVAQEAFIKAYRALP 63

Query: 69  SLLDEKAAKAWLITI--------LRRENARRFERKQFDLVDIDDHDYEAKYSDDEHHQNE 120
           S   + A   WL  I        L  +  R     +FD  + +  D   +  D    +N 
Sbjct: 64  SFRGDSAFYTWLYRIGINTAKNYLVAQGRRAPTSTEFDSEEAETFDDGEQLRDINTPENL 123

Query: 121 WLQRQILK--------LDVEYRELLFLQVVGGFSGEEIADILSLNKNTVMTRLFRAR--- 169
            L +QI +        L  E R  + L+ + G S EEIA I+     T+ +R+FRAR   
Sbjct: 124 LLSKQIGETVNAAMDALPEELRTAIMLRELEGLSYEEIAKIMDCPIGTIRSRIFRAREAV 183

Query: 170 -NQLKEMMD 177
             +L+ ++D
Sbjct: 184 ATKLRPLLD 192