Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 177 a.a., Probable alternative RNA polymerase sigma factor SigL from Mycobacterium tuberculosis H37Rv

 Score = 57.8 bits (138), Expect = 1e-13
 Identities = 51/157 (32%), Positives = 80/157 (50%), Gaps = 14/157 (8%)

Query: 29  ALVRAYHRD----LYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLD-EKAAKAWLITI 83
           AL+RA + +    L+RYA  L  D + AED+VQET LRAW+  + + D  + A+AWL T+
Sbjct: 13  ALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLFTV 72

Query: 84  LRRE--NARRFERKQFDLVDIDDHDYEAKYSDDEHHQNEWLQRQIL-----KLDVEYREL 136
            R    + RR  R +  +   D      + + DE   N  L R ++     +L  E+R +
Sbjct: 73  ARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDE--VNAALDRLLIADALAQLSAEHRAV 130

Query: 137 LFLQVVGGFSGEEIADILSLNKNTVMTRLFRARNQLK 173
           +      G+S  +IA  L + + TV +RL  A   L+
Sbjct: 131 IQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALR 167