Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 177 a.a., RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 62.4 bits (150), Expect = 4e-15
 Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 5/152 (3%)

Query: 27  YEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITILRR 86
           ++ L   +H+ +Y  +  LC   S AE++ QE  +  W+ L     E     WL T+   
Sbjct: 29  FKQLYLNHHKKVYALSLRLCGQASQAEEITQECFILVWQKLPQFKGESQFSTWLHTLCVN 88

Query: 87  ENARRFERKQFDL-VDIDDHDYEAKY-SDDEHHQNEWLQRQILKLDVEYRELLFLQVVGG 144
           + A  F RKQ          + +A++ S DE++Q   L + ILKL    R +  L  + G
Sbjct: 89  Q-ALSFIRKQKSFWARFIPMESDAEHPSSDENYQG--LDKLILKLPERARIVFVLCAIEG 145

Query: 145 FSGEEIADILSLNKNTVMTRLFRARNQLKEMM 176
           +  EEIA +L +   T  T+  RA+  L+EM+
Sbjct: 146 YQHEEIAQLLGIAVGTSKTQYHRAKQLLQEML 177