Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 191 a.a., RNA polymerase sigma factor RpoE from Klebsiella michiganensis M5al

 Score = 49.7 bits (117), Expect = 3e-11
 Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 15/134 (11%)

Query: 54  DLVQETCLRAWKSLDSLLDEKAAKAWL--ITILRREN-----ARRFERKQFDLVDIDDHD 106
           D+VQE+ ++AW++LDS   + A   WL  I +   +N      RR      D  D ++ +
Sbjct: 48  DVVQESFVKAWRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDANDAENFE 107

Query: 107 YEAKYSDDEHHQNEWLQ--------RQILKLDVEYRELLFLQVVGGFSGEEIADILSLNK 158
                 +  + +N  L         R I  L  + R  + L+ + G S EEIA I+    
Sbjct: 108 SGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGMSYEEIAAIMDCPV 167

Query: 159 NTVMTRLFRARNQL 172
            TV +R+FRAR  +
Sbjct: 168 GTVRSRIFRAREAI 181