Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 176 a.a., ECF RNA polymerase sigma factor EcfG from Enterobacter sp. TBS_079

 Score = 59.3 bits (142), Expect = 4e-14
 Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 5/168 (2%)

Query: 25  RKYEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITIL 84
           R+    + A+   L+RY   L ++R +AE+LVQ TC+RA +     +       WL  IL
Sbjct: 9   REVRQQLAAHLSRLWRYGLVLSRNRDVAEELVQSTCVRALEKSSQYMPGTRIDRWLFAIL 68

Query: 85  R-----RENARRFERKQFDLVDIDDHDYEAKYSDDEHHQNEWLQRQILKLDVEYRELLFL 139
                    AR   + Q  +   +    + +  D+ H     + +++  L    R  +FL
Sbjct: 69  HSIWISELRARHVRQGQGFVASDELLAPDTREQDETHLHYLKVMQRVNMLPEAQRNTVFL 128

Query: 140 QVVGGFSGEEIADILSLNKNTVMTRLFRARNQLKEMMDGSEHYPEQQN 187
             V GF+ +E A+ L++   TVM+RL  AR  L    D      E+++
Sbjct: 129 VYVEGFTYQEAANTLAVPIGTVMSRLATARATLAASADALPPVKEKRS 176