Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 187 a.a., RNA polymerase sigma factor (RefSeq) from Shewanella sp. ANA-3

 Score =  222 bits (565), Expect = 4e-63
 Identities = 108/174 (62%), Positives = 137/174 (78%), Gaps = 3/174 (1%)

Query: 10  KKVSQRPVNNDM-DRQRKYEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLD 68
           KK  +  V++DM  +QR+Y +LV+A H D++RYA+WLC D+ +AED+ QET LRAW+SLD
Sbjct: 7   KKSVEPAVSSDMLSKQRRYNSLVKALHADIFRYAFWLCGDKQVAEDITQETFLRAWRSLD 66

Query: 69  SLLDEKAAKAWLITILRRENARRFERKQFDLVDIDDHDYEAKYSDDEHHQNE--WLQRQI 126
           SL D+KAAKAWLITILRRENARRFERKQFD  D++    E   +     Q E  WL+RQI
Sbjct: 67  SLQDDKAAKAWLITILRRENARRFERKQFDYADVEQDSLEDHIASSTEEQTEQYWLRRQI 126

Query: 127 LKLDVEYRELLFLQVVGGFSGEEIADILSLNKNTVMTRLFRARNQLKEMMDGSE 180
            KLD+EYRE L LQ++GGFSG+EIA +L LN+NTVMTRLFRARNQLKE+++ +E
Sbjct: 127 AKLDIEYREPLLLQLIGGFSGDEIAQLLELNRNTVMTRLFRARNQLKELLEKTE 180