Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 177 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella sp. ANA-3

 Score = 58.9 bits (141), Expect = 5e-14
 Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 13/156 (8%)

Query: 27  YEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITILRR 86
           ++ L   +H  +Y  +  L    S AE++ QE  +  W+ L     E     WL +I   
Sbjct: 29  FKQLYLHHHPRVYALSLRLSGQASQAEEITQECFILVWQKLPQFRGESQFSTWLHSICVN 88

Query: 87  ENARRFERKQ------FDLVDIDDHDYEAKYSDDEHHQNEWLQRQILKLDVEYRELLFLQ 140
           + A  F RKQ      F  ++ DD    A    DEH+Q   L + IL+L    R +  L 
Sbjct: 89  Q-ALSFIRKQKSFWARFIPMESDDEHSSA----DEHYQG--LDKLILRLPERARIVFVLC 141

Query: 141 VVGGFSGEEIADILSLNKNTVMTRLFRARNQLKEMM 176
            + G+  EEIA +L +   T  T+  RA+  L+EM+
Sbjct: 142 AIEGYQHEEIAQLLGIAVGTSKTQYHRAKQLLQEML 177