Pairwise Alignments

Query, 253 a.a., DUF3379 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 234 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  119 bits (298), Expect = 6e-32
 Identities = 74/240 (30%), Positives = 128/240 (53%), Gaps = 16/240 (6%)

Query: 11  MDELEFRRKVMSDPKQRDNDTLDMMTSSEANAKFVDDVLQLDKQIAQAFKVDVPDDLADK 70
           MDEL+FRR+   DP+ +D + L+ M ++  +   V ++ +LD +++ A KV VP+DLADK
Sbjct: 1   MDELKFRRQAYEDPRNQDPEFLEQMQATPEHQALVSELKRLDAKLSHALKVAVPEDLADK 60

Query: 71  ILFKQTTLVEDEKVIRPQFVRKAMAIAASVAFTAGLLVGQIQWGNLLISPAQASLSDMAV 130
           ++ +Q      ++  +  F+   +A+AASVAF  G+    ++ G          L++ A+
Sbjct: 61  LILRQQLQQHHKQRRQTGFL---VAMAASVAFIVGISFSLLRLG-------PVDLAEHAL 110

Query: 131 QHVIHEEGFVNRLDEQADMQQINAKMRPFAYKMEGDF---PYHVYYLNHCGFGKDNAVHM 187
            HV H EG   ++D+  +  Q+NA++          F   P  VYY ++C F    ++H+
Sbjct: 111 AHVYH-EGVALQVDQNVNFSQVNAQLAAMKNLEHAKFIEQPGKVYYTSYCDFQGVKSLHL 169

Query: 188 VFQGEKGKVTLFFTPIHSAQ--SSLFKQEGMAGIIEPVGNASLILVGEKDENLTNIANKL 245
           V Q EKGKVTLF  PI       + F      G+     +A ++L+GE   +L  + +++
Sbjct: 170 VLQAEKGKVTLFIVPIEKRMVLDNTFADGKYKGMGFETRDAYILLIGEDQADLRFVKDEI 229