Pairwise Alignments

Query, 428 a.a., long-chain fatty acid transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 440 a.a., membrane protein involved in aromatic hydrocarbon degradation (RefSeq) from Shewanella amazonensis SB2B

 Score =  322 bits (825), Expect = 1e-92
 Identities = 190/448 (42%), Positives = 259/448 (57%), Gaps = 44/448 (9%)

Query: 4   MRLFKKSLLAVTVTLATQQAFAAGFQLNAQSATGLGRAFAGDAVIADNAAVMSRNPAAMA 63
           M+ F K+LLA  + LA+ Q  AAGFQLN+ SATG+GRA +GDAVIADNA+V+SRNPAAMA
Sbjct: 8   MKYFNKTLLAAAIGLASTQTLAAGFQLNSHSATGVGRAISGDAVIADNASVLSRNPAAMA 67

Query: 64  LFDEMALSLGFETITTMIDVKNVSYRGVLGNSVSVQDTDDVGGTSVAPNIHLIVPVNEQF 123
           LFD  ALSLG       + VK+V      G  +      D     + PN + I P+N+++
Sbjct: 68  LFDNTALSLGVTYADIDVSVKDVC---KAGTPICFGSDTDAAEDKIIPNFYYINPINDKW 124

Query: 124 AWGVNAYSNFGTKTEFS------------DSYPAS-EYGGLTDVKSFNLGLAGSYRVNKE 170
           A+GV A+SNFGT T+               + PA  +  G T+V + NL  + SYRVN++
Sbjct: 125 AFGVAAFSNFGTGTDPGALANNAVTLPGLGTIPAPVDLLGNTEVITMNLNASLSYRVNEQ 184

Query: 171 WSFGAGLDLIYGQGTMKRIAGTSFPASTIVVNPTTVIPARGTSLLNVDKADGWAVGFNLG 230
            S GAG+D+IYGQGT+ R     F  +  +V           SL+NVD ADGWA+G  LG
Sbjct: 185 LSLGAGVDVIYGQGTLTRKGNLPFGPNGEMV---------PVSLVNVD-ADGWALGGILG 234

Query: 231 TVYEMDENNRFGLSYRYSPEFKAKDDYG------------QEITLPLPDIAEFSGFHKIE 278
            VYE + ++R G+SYR+SPEFKA  D               EI +PLPDI + +GFH++ 
Sbjct: 235 AVYEFNADHRLGVSYRFSPEFKASGDVQTLVPQAQAYANFDEIVIPLPDIFQVAGFHQL- 293

Query: 279 NTQFAVHYSVQWIGWSAFDKIEFRNLVTSRSSVGALTKGSYDKMYEWQDGWHYSIGGTYY 338
             +FA+HY+ Q   W  F +I   N    ++S+      S  K Y W D W +SIGGTY 
Sbjct: 294 TEKFALHYTAQLTSWGDFKEITLENGTLGQTSI----PSSQLKHYAWDDSWLFSIGGTYQ 349

Query: 339 LNSDWTLRAGYMYDTSAQDSRTSISVPDSDRQWLSAGFTYNIDDKSNVDFGFTYLMGKDV 398
           L+  WTLRAGYM+D    D  +SIS+PDSDR W + G +Y +   + +D G   + G+D 
Sbjct: 350 LSDAWTLRAGYMHDQGVVDEISSISIPDSDRNWYTLGASYALSANATLDLGVALVRGEDT 409

Query: 399 AVSENDA-GSKLTATTHADAILLGLQYS 425
            V E  A    + A T ++A+   LQY+
Sbjct: 410 QVLEQSAIIGDVIAHTRSNAVYYSLQYN 437