Pairwise Alignments

Query, 428 a.a., long-chain fatty acid transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., membrane protein involved in aromatic hydrocarbon degradation (RefSeq) from Shewanella amazonensis SB2B

 Score =  209 bits (531), Expect = 2e-58
 Identities = 137/420 (32%), Positives = 209/420 (49%), Gaps = 42/420 (10%)

Query: 6   LFKKSLLAVTVTLA----TQQAFAAGFQLNAQSATGLGRAFAGDAVIADNAAVMSRNPAA 61
           + KKS+L   V+ A    T Q  AAGFQL   SATGLGRAFAG+A +ADNAA  +RNPA 
Sbjct: 2   IMKKSVLTFAVSAALMGITTQVNAAGFQLAEYSATGLGRAFAGEAAMADNAAAQARNPAM 61

Query: 62  MALFDEMALSLGFETITTMIDVKN--------VSYRGVLGNSVSVQDTDDVGGTSVAPNI 113
           +A      +S G   + T +DV          +  +GV  N+    D  DV  +++ PN 
Sbjct: 62  LAYLSGRQVSGGGIYVATEVDVTGDVHIASPVLGPQGVTLNA----DAYDVADSALIPNF 117

Query: 114 HLIVPVNEQFAWGVNAYSNFGTKTEFSDSYPASEYGGLTDVKSFNLGLAGSYRVNKEWSF 173
           +    +N+ + WG+   SN+G  TE   ++ AS +G  T++ +       +YR+N   + 
Sbjct: 118 YYSSQINDNWTWGLAVNSNYGLATELPATHAASLFGHHTEITTVEFNPNIAYRLNDAVTL 177

Query: 174 GAGLDLIYGQGTMKRIAGTSFPASTIVVNP------TTVIPARGTSLLNVDKADGWAVGF 227
           GAG+ ++YG G++   A T +    I  NP         +P  GT +L   + D  + G+
Sbjct: 178 GAGVRIVYGDGSIG--AATPYWVGAIKANPNLPAQIAARLPEPGT-VLKTMEGDDVSYGW 234

Query: 228 NLGTVYEMDENNRFGLSYRYSPEFKAKD-------------DYGQEITLPLPDIAEFSGF 274
            +G  ++  EN+RFGL+Y    E +                D    + L LP  AE S F
Sbjct: 235 QVGGSWQPSENHRFGLAYHSGVELELSGSAAGLVYTGGQNLDIEGYLPLELPAFAELSSF 294

Query: 275 HKIENTQFAVHYSVQWIGWSAFDKIEFRNLVTSRSSVGALTKGSYDKMYEWQDGWHYSIG 334
           H++ +   A+H SV W  WS FD++           VG + +    K   ++D W  ++G
Sbjct: 295 HQLSD-DVALHASVNWTQWSVFDRL-VAYFPGETKPVGGI-ESDLVKEENFKDSWRVAVG 351

Query: 335 GTYYLNSDWTLRAGYMYD-TSAQDSRTSISVPDSDRQWLSAGFTYNIDDKSNVDFGFTYL 393
            T+ +N DWT+R+G+  D T+  D   + ++PDSDR W S G  Y   +   VD   TY+
Sbjct: 352 STWNVNKDWTVRSGFAVDRTAVDDEFRTTTIPDSDRLWFSLGAGYRASENLTVDMAITYI 411