Pairwise Alignments

Query, 428 a.a., long-chain fatty acid transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 429 a.a., Membrane protein involved in aromatic hydrocarbon degradation (NCBI) from Rhodospirillum rubrum S1H

 Score =  140 bits (354), Expect = 6e-38
 Identities = 110/437 (25%), Positives = 185/437 (42%), Gaps = 39/437 (8%)

Query: 11  LLAVTVTLATQQAFAAGFQLNAQSATGLGRAFAGDAVIADNAAVMSRNPAAMALFDEMAL 70
           L  + V L+   A+A+GFQL  QSA GLG AFAG    A + +    NPA +        
Sbjct: 13  LCGLAVALSGGSAWASGFQLKEQSAEGLGNAFAGATAKAYDPSTAFYNPAGLTRLKGTQA 72

Query: 71  SLGFETITTMIDVKNVSYRGVLGNSVSVQDTDDVGGTSVAPNIHLIVPVNEQFAWGVNAY 130
                 I             + G++ S++  D V   +V P+ + +   N+   +G+ A 
Sbjct: 73  DSVLTYIMPKAHFSGSGTNALGGSTGSIEGGDAVADAAV-PSFYGVYSYNDDLKFGIAAN 131

Query: 131 SNFGTKTEFSDSYPASEYGGLTDVKSFNLGLAGSYRVNKEWSFGAGLDLIYGQGTMKRIA 190
             FG +T++  ++        +D++   L  + +YRV  + SFG   D   G G + + A
Sbjct: 132 VPFGLRTDYDKNWAGRYQAIESDLQIVTLTPSVAYRVVGDSSFG---DFSIGGGPVVQFA 188

Query: 191 GTSFPASTIVVNPTTVIPARGTSLLNVDKADGWAVGFNLGTVYEMDENNRFGLSYRYSPE 250
                  T  VN   ++   G + ++         GFN+G ++E  E  R G++YR   E
Sbjct: 189 SVKL---TNAVNNFGLVAGDGRAKVS---GSDIGYGFNIGALWEPTETTRIGVNYRSRVE 242

Query: 251 FKAKDDY------------------GQEITLPLPDIAEFSGFHKIENTQFAVHYSVQWIG 292
                D                   G    L  PD+     +H+ +  Q+AV   V W  
Sbjct: 243 HNFDGDAKYTNVARPLAISRGLVNSGASADLTTPDVVSIGAYHEFD-PQWAVTADVAWTN 301

Query: 293 WSAFDKIEFRNLVTSRSSVGALTKGSYDKMYEWQDGWHYSIGGTYYLNSDWTLRAGYMYD 352
           WS FD+++  N        G +T+        W+D    ++GG Y    D  LR G  YD
Sbjct: 302 WSLFDELKIEN-----DKGGVITRVDES----WEDTMFVALGGIYKPVEDVALRIGVAYD 352

Query: 353 TSAQDSR-TSISVPDSDRQWLSAGFTYNIDDKSNVDFGFTYLMGKDVAVSENDAGSKLTA 411
            +    +  +  +PD++R WL+AG +Y + D  ++D  + ++    V+++E  A   LT 
Sbjct: 353 QAPVGKKHRTARIPDTNRYWLAAGVSYAVTDSFSLDASYAHIFADRVSINETTAQGNLTG 412

Query: 412 TTHADAILLGLQYSRTF 428
           T  +   +L    +  F
Sbjct: 413 TYDSSIDILSASATLRF 429