Pairwise Alignments

Query, 428 a.a., long-chain fatty acid transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 437 a.a., long-chain fatty acid transport protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  224 bits (570), Expect = 5e-63
 Identities = 142/451 (31%), Positives = 230/451 (50%), Gaps = 45/451 (9%)

Query: 8   KKSLLAVTVTLA----TQQAFAAGFQLNAQSATGLGRAFAGDAVIADNAAVMSRNPAAMA 63
           +K LL + VT A    T Q  AAGFQL   SATGLGRAFAG+A +ADNA+   RNPA + 
Sbjct: 2   QKRLLTLAVTAALLSTTTQVHAAGFQLAEYSATGLGRAFAGEAAMADNASAQFRNPAMLT 61

Query: 64  LFDEMALSLGFETITTMIDVKNVSYRGVLGNSVSVQDTDDVGGTSVAPNIHLIVPVNEQF 123
                 ++ G   +   IDV+       +GN        D+ G +V PN ++   +N+Q+
Sbjct: 62  YLTGTQMTTGAILVMPNIDVEG---EVTVGNVTQATAAKDMAGNAVIPNFYVSHQLNQQW 118

Query: 124 AWGVNAYSNFGTKTEFSDSYPASEYGGLTDVKSFNLGLAGSYRVNKEWSFGAGLDLIYGQ 183
             GV   +NFG  TE  D +  S++G    +K+  +    +YR+N++ S G G+ L+ G+
Sbjct: 119 FIGVALGTNFGMATELDDDFLGSQFGNEASIKAIEINPNVAYRINEQLSVGGGVRLVLGE 178

Query: 184 GTMKRIAGTSFPASTIVVNPTTVIPARGTSLLNVDKADGWAVGFNLGTVYEMDENNRFGL 243
           G++    G    A  ++  P   +P    + L   + D  + G+ LG  ++++ ++R GL
Sbjct: 179 GSI----GAKSSADAVLPTPIGNLPVPKGTTLKYMEGDDISWGWQLGGAWQINADHRIGL 234

Query: 244 SYRYSPEFKAKDD--------------YGQEITLPLPDIAEFSGFHKIENTQFAVHYSVQ 289
           +YR + + + + +                  + L LP   E + FH++   Q AVH SV 
Sbjct: 235 NYRSAVDQRLEGEANGLAFNPLAPNQKLAGSMELSLPATVELASFHQL-TPQLAVHASVN 293

Query: 290 WIGWSAFDKIEFRNLVTSRSSVGALTKGSYDKMYEWQDGWHYSIGGTYYLNSDWTLRAGY 349
           W  WS+F+K+E   ++ S      L      K   W+D + +++G TY L+   +LRAG 
Sbjct: 294 WTDWSSFEKLE--AVIPSLKVPTQLV-----KQENWEDSYRFALGATYRLDDQSSLRAGV 346

Query: 350 MYDTSA-QDSRTSISVPDSDRQWLSAGFTYNIDDKSNVDFGFTYLMGKDVAV-------- 400
            YD SA  D+  ++++P+ +R WLSAG+ Y    + ++DFG TY++  +  V        
Sbjct: 347 AYDMSAVSDANRTLTIPEMNRVWLSAGYGYQFSKQLDLDFGVTYIIADESPVVEPRPGID 406

Query: 401 SENDA---GSKLTATTHADAILLGLQYSRTF 428
           S+N A   G   + TT  + +L G+Q S  F
Sbjct: 407 SDNSAALFGGTFSGTTSGNILLFGVQASYRF 437