Pairwise Alignments

Query, 428 a.a., long-chain fatty acid transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 449 a.a., membrane protein involved in aromatic hydrocarbon degradation (RefSeq) from Shewanella sp. ANA-3

 Score =  213 bits (541), Expect = 1e-59
 Identities = 152/455 (33%), Positives = 227/455 (49%), Gaps = 47/455 (10%)

Query: 8   KKSLLAVTVTLA----TQQAFAAGFQLNAQSATGLGRAFAGDAVIADNAAVMSRNPAAMA 63
           +K LL + VT A    T Q  AAGFQL   SATGLGRAFAG+A IADNA+V  RNPA + 
Sbjct: 2   QKRLLTLAVTAALLSTTTQVQAAGFQLAEYSATGLGRAFAGEAAIADNASVQGRNPAMLT 61

Query: 64  LFDEMALSLGFETITTMIDVK-NVSYRGVL--GNSVSVQDTD--DVGGTSVAPNIHLIVP 118
             +   LS G   +   +DVK +VS    L   N V ++  D  DV   ++ PN +    
Sbjct: 62  YLEGRQLSAGGIYVMPNVDVKGDVSLSSPLLGPNPVEMKGGDALDVADDALVPNFYYSNQ 121

Query: 119 VNEQFAWGVNAYSNFGTKTEFSDSYPASEYGGLTDVKSFNLGLAGSYRVNKEWSFGAGLD 178
           +N+Q+ WG+   SN+G  TE   ++ A+ +G  T V +       +YRVN   S G G+ 
Sbjct: 122 LNDQWTWGLAVNSNYGLSTELPKTHAAAIFGNKTAVTTVEFNPNIAYRVNDAVSVGGGVR 181

Query: 179 LIYGQGTMKRIAGTSFPASTIVVNP------TTVIPARGTSLLNVDKADGWAVGFNLGTV 232
           ++YG+G +    G S P     + P      + ++P  GT L ++ K D    G+ LGT 
Sbjct: 182 IVYGEGEI----GASLPGWVDRIKPALPAQVSAMLPPGGTELKSM-KGDDIGYGWQLGTS 236

Query: 233 YEMDENNRFGLSYRYSPEFKAKD-------DYGQE------ITLPLPDIAEFSGFHKIEN 279
           ++++  +R GL+Y    +   +        D GQ       I L LP  AE S +H++ +
Sbjct: 237 WQINPAHRVGLAYHSGVKLDLEGHASGVIYDGGQNLSIEGYIPLELPAFAELSSYHQLTD 296

Query: 280 TQFAVHYSVQWIGWSAFDKI--EFRNLVTSRSSVGALTKGSYDKMYEWQDGWHYSIGGTY 337
             +A+H SV W  WS FD++   F   V  +  +    +    K   ++D W +++G TY
Sbjct: 297 -NWAMHASVNWTDWSVFDQLVAYFPGEVKPKGDL----ESDLVKEEHFEDNWRFALGTTY 351

Query: 338 YLNSDWTLRAGYMYD-TSAQDSRTSISVPDSDRQWLSAGFTYNIDDKSNVDFGFTYLMGK 396
            ++++W +RAG   D T+A +   + ++PDSDR W S G  Y      NVDF  TY+   
Sbjct: 352 QVSNEWLVRAGVALDKTAATNEWRTTTIPDSDRLWFSVGAGYQATKNLNVDFALTYIRAT 411

Query: 397 -DVAVSE-----NDAGSKLTATTHADAILLGLQYS 425
            D  ++E     N A          D  L G+Q S
Sbjct: 412 GDAPINEQQNLLNLATVSFNGEASGDVWLAGIQMS 446