Pairwise Alignments

Query, 432 a.a., aromatic hydrocarbon degradation protein from Vibrio cholerae E7946 ATCC 55056

Subject, 451 a.a., membrane protein involved in aromatic hydrocarbon degradation (RefSeq) from Shewanella loihica PV-4

 Score =  409 bits (1050), Expect = e-118
 Identities = 225/451 (49%), Positives = 290/451 (64%), Gaps = 28/451 (6%)

Query: 5   KTLLSCAVAFGLASVSTFTQAAGFQLAEYSATGLGRAYAGEAAMADNASAQWRNPAMLTY 64
           K +LS AV   +A+  +  QAAGFQLAEYSATGLGRA+AGEAAMADNA+AQ RNPAMLTY
Sbjct: 4   KHILSLAVVAAIATPLSQVQAAGFQLAEYSATGLGRAFAGEAAMADNAAAQARNPAMLTY 63

Query: 65  LEGTQVSAGAIYVNPNVDVEGTVNHAQ--LGKTHASSN----DFAHDAVIPNFYLSHQLN 118
           LEG Q+S G IYV PNVDVEG V  A   LG    + N    D A DA++PNFY S+QLN
Sbjct: 64  LEGRQLSLGGIYVMPNVDVEGDVTLASPVLGPQGVTMNADALDVADDALVPNFYYSNQLN 123

Query: 119 EQMALGFALGTNYGMETDLGTEFAASHFGNQASVISKEANLNIAYQILPQLSIGGGVRYV 178
           +Q   G A+ +NYG+ T++ +    + FG + SV + E N N+AY++   +S+G G+R V
Sbjct: 124 DQWTWGLAVNSNYGLATEVPSTHPTAIFGKETSVTTVEFNPNLAYKVSEAVSVGAGLRIV 183

Query: 179 MGEGHFGATAPA-----KNLIRHPVTNNVMTLPKGTTLKYMEGEDNSWGWQVGSAWQINQ 233
            GEG  GA+ PA     K +   P        P GT+LK MEG+D  +GWQ+G++WQIN 
Sbjct: 184 YGEGKIGASTPAWVDGIKAIPTLPAEIAGALPPGGTSLKSMEGDDIGYGWQLGASWQINP 243

Query: 234 DHRVGFAYKSEVVMDFEGHAEGVSYGSYK----PGMMSVTLPATAELASFHQLNDQWAIH 289
            HR+G AY S V ++ +GHA G+ Y   +     G M + LPA AELAS+HQL D WA+H
Sbjct: 244 AHRIGLAYHSGVELELDGHASGLIYNGGQDVEIEGYMPLELPAFAELASYHQLTDNWAMH 303

Query: 290 ASINWTDWSSFKELTAVFPE--------KSDLIKSENWEDNYRFALGTTYQYDAKLALRA 341
           ASINWT WS F +L A FP         +SDL+K EN++DN+RFALGT+YQ   K  +R 
Sbjct: 304 ASINWTQWSVFDQLVAYFPGEQKPVGGLESDLVKVENFKDNWRFALGTSYQLSDKWLVRG 363

Query: 342 GVAYDTSAVDDKNRTATIPETDRTWVSVGGSYVATPQLTLDAGFTYIFAK-DATINEPRD 400
           GVA D +AV+D+ RT TIP++DR W S G  Y A+  LTLD   TYI A  DA INE  +
Sbjct: 364 GVALDKTAVEDEYRTITIPDSDRLWFSAGAGYQASKNLTLDFAVTYIKAHGDAPINETMN 423

Query: 401 ASDQTAAAIGGAFTGNVSGNVWLIGVQANYR 431
             +        +F G   G+VWL+G Q +Y+
Sbjct: 424 LMNLAQV----SFNGEAGGDVWLLGAQLSYK 450