Pairwise Alignments

Query, 432 a.a., aromatic hydrocarbon degradation protein from Vibrio cholerae E7946 ATCC 55056

Subject, 438 a.a., membrane protein involved in aromatic hydrocarbon degradation (RefSeq) from Shewanella loihica PV-4

 Score =  184 bits (466), Expect = 6e-51
 Identities = 136/460 (29%), Positives = 222/460 (48%), Gaps = 57/460 (12%)

Query: 4   NKTLLSCAVAFGLASVSTFTQAAGFQLAEYSATGLGRAYAGEAAMADNASAQWRNPAMLT 63
           NKT+L+ AV       S+   AAGFQL   SATG+GRA+AG+A +ADNAS   RNPA + 
Sbjct: 5   NKTILAVAVTLA----SSQAMAAGFQLNSQSATGVGRAFAGDAVIADNASVLSRNPAAMA 60

Query: 64  YLEGTQVSAGAIYVNPNVDVEGTVNHAQLGKTHASSNDFAHDA-VIPNFYLSHQLNEQMA 122
             +  Q+S G  Y +  V V+     + +G  H    D A +A +IPNFY    +N++ A
Sbjct: 61  LFDEKQLSMGLTYADVEVSVKDVYIDSLVGPIHYGHVDDAAEAKIIPNFYYVSPVNDKFA 120

Query: 123 LGFALGTNYGMETDL---------GTEFAASHFGNQASVISKEANLNIAYQILPQLSIGG 173
            G A+ +N+G  TD          G        G +  V +   NL+ +Y+     S+G 
Sbjct: 121 YGVAMFSNFGTGTDTTPMSQQLVNGLPAPLDLLG-KTEVTTLNFNLSASYRFNDHFSVGA 179

Query: 174 GVRYVMGEGHF--GATAPAK-NLIRHPVTNNVMTLPKGTTLKYMEGEDNSWGWQVGSAWQ 230
           GV  + G+G    G   P +   ++  + +             ++ +  ++G  +G+ ++
Sbjct: 180 GVDVIYGQGTLTRGGLVPTQAGAVQQDLVD-------------VDADGVAFGGIIGAVYE 226

Query: 231 INQDHRVGFAYKSEVVMDFEGHAE-----GVSYGSYKPGMMSVTLPATAELASFHQLNDQ 285
           IN DHR G +Y+     DF+   +      V+  +     +++ +P   ++A FHQL ++
Sbjct: 227 INADHRFGMSYRFS--PDFKATGDINMYNPVAGANVAFDEINIPMPDIFQVAGFHQLTEK 284

Query: 286 WAIHASINWTDWSSFKELTA---------VFPEKSDLIKSENWEDNYRFALGTTYQYDAK 336
           +A+H +   T W  FKE+T          V PE S  +K+  W+D++ F++G TY  +  
Sbjct: 285 FALHYTAQLTTWGDFKEITVTDGTIGGVPVAPEAS--LKTYAWDDSWLFSVGGTYTLNQD 342

Query: 337 LALRAGVAYDTSAVDDKNRTATIPETDRTWVSVGGSYVATPQLTLDAGFTYIFAKDATIN 396
             +RAG  +D   V + + + +IP++DR W + G +Y      +LD G  +I  +D  + 
Sbjct: 343 WTVRAGYMFDQGVVGEVS-SISIPDSDRQWFTAGATYNLGKHASLDFGVAFIRGEDVDLI 401

Query: 397 EPRDASDQTAAAIGGAFTGNV----SGNVWLIGVQANYRF 432
           E    S  T     G  TG V      N     +Q NY+F
Sbjct: 402 E---HSAITGGLPIGPDTGMVHATTRSNATYYSMQYNYKF 438