Pairwise Alignments

Query, 432 a.a., aromatic hydrocarbon degradation protein from Vibrio cholerae E7946 ATCC 55056

Subject, 437 a.a., long-chain fatty acid transport protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  491 bits (1265), Expect = e-143
 Identities = 254/438 (57%), Positives = 313/438 (71%), Gaps = 13/438 (2%)

Query: 5   KTLLSCAVAFGLASVSTFTQAAGFQLAEYSATGLGRAYAGEAAMADNASAQWRNPAMLTY 64
           K LL+ AV   L S +T   AAGFQLAEYSATGLGRA+AGEAAMADNASAQ+RNPAMLTY
Sbjct: 3   KRLLTLAVTAALLSTTTQVHAAGFQLAEYSATGLGRAFAGEAAMADNASAQFRNPAMLTY 62

Query: 65  LEGTQVSAGAIYVNPNVDVEGTVNHAQLGKTHASSNDFAHDAVIPNFYLSHQLNEQMALG 124
           L GTQ++ GAI V PN+DVEG V    + +  A + D A +AVIPNFY+SHQLN+Q  +G
Sbjct: 63  LTGTQMTTGAILVMPNIDVEGEVTVGNVTQATA-AKDMAGNAVIPNFYVSHQLNQQWFIG 121

Query: 125 FALGTNYGMETDLGTEFAASHFGNQASVISKEANLNIAYQILPQLSIGGGVRYVMGEGHF 184
            ALGTN+GM T+L  +F  S FGN+AS+ + E N N+AY+I  QLS+GGGVR V+GEG  
Sbjct: 122 VALGTNFGMATELDDDFLGSQFGNEASIKAIEINPNVAYRINEQLSVGGGVRLVLGEGSI 181

Query: 185 GATAPAKNLIRHPVTNNVMTLPKGTTLKYMEGEDNSWGWQVGSAWQINQDHRVGFAYKSE 244
           GA + A  ++  P+ N  + +PKGTTLKYMEG+D SWGWQ+G AWQIN DHR+G  Y+S 
Sbjct: 182 GAKSSADAVLPTPIGN--LPVPKGTTLKYMEGDDISWGWQLGGAWQINADHRIGLNYRSA 239

Query: 245 VVMDFEGHAEGVSYGSYKP-----GMMSVTLPATAELASFHQLNDQWAIHASINWTDWSS 299
           V    EG A G+++    P     G M ++LPAT ELASFHQL  Q A+HAS+NWTDWSS
Sbjct: 240 VDQRLEGEANGLAFNPLAPNQKLAGSMELSLPATVELASFHQLTPQLAVHASVNWTDWSS 299

Query: 300 FKELTAVFPE---KSDLIKSENWEDNYRFALGTTYQYDAKLALRAGVAYDTSAVDDKNRT 356
           F++L AV P     + L+K ENWED+YRFALG TY+ D + +LRAGVAYD SAV D NRT
Sbjct: 300 FEKLEAVIPSLKVPTQLVKQENWEDSYRFALGATYRLDDQSSLRAGVAYDMSAVSDANRT 359

Query: 357 ATIPETDRTWVSVGGSYVATPQLTLDAGFTYIFAKDATINEPRDA--SDQTAAAIGGAFT 414
            TIPE +R W+S G  Y  + QL LD G TYI A ++ + EPR    SD +AA  GG F+
Sbjct: 360 LTIPEMNRVWLSAGYGYQFSKQLDLDFGVTYIIADESPVVEPRPGIDSDNSAALFGGTFS 419

Query: 415 GNVSGNVWLIGVQANYRF 432
           G  SGN+ L GVQA+YRF
Sbjct: 420 GTTSGNILLFGVQASYRF 437