Pairwise Alignments

Query, 432 a.a., aromatic hydrocarbon degradation protein from Vibrio cholerae E7946 ATCC 55056

Subject, 440 a.a., long-chain fatty acid transport protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  187 bits (475), Expect = 6e-52
 Identities = 138/467 (29%), Positives = 223/467 (47%), Gaps = 69/467 (14%)

Query: 4   NKTLLSCAVAFGLASVSTFTQAAGFQLAEYSATGLGRAYAGEAAMADNASAQWRNPAMLT 63
           NKTLL+ A+A  LAS  TF  A+GFQL   SATG+GRA+AG+A +ADNA+   RNPA + 
Sbjct: 5   NKTLLTVAIA--LASSQTF--ASGFQLNSQSATGMGRAFAGDAVIADNATVLSRNPAAMA 60

Query: 64  YLEGTQVSAGAIYVNPNVDVEGTVNHAQLGKTHASS-NDFAHDAVIPNFYLSHQLNEQMA 122
             +   +S G  Y +  VDV+    +   G     S +D     VIPN +  H ++++ A
Sbjct: 61  LFDKDAISFGLTYADITVDVKDVNFNLPNGAVDLGSIDDAGSSKVIPNIFYIHPIDDKFA 120

Query: 123 LGFALGTNYGMETDLGTEFAASHFGNQA--------SVISKEANLNIAYQILPQLSIGGG 174
           +GFA  +N+G  TD  +       G+ A         V +   N +++Y+I    SIG G
Sbjct: 121 VGFAAFSNFGTGTDASSLSKNLPKGSPAPYDLLGETEVTTVNFNASVSYRINDIFSIGAG 180

Query: 175 VRYVMGEGHFGATAPAKNLIRHPVTNNVMTLPKGTTLKYMEGEDNSWGWQVGSAWQINQD 234
           V  + GEG               +T N  T P    L  ++ +  ++G  +G+  ++++D
Sbjct: 181 VDAIYGEGR--------------LTRNASTTP----LVDVDADGWAFGGILGATVELDKD 222

Query: 235 HRVGFAYKSEVVMDFEGHAEGVSYGSYK-PGMMSVTLPAT------------AELASFHQ 281
           +R G +Y+    ++ EG    +S       G+ S T  AT             ++A FHQ
Sbjct: 223 NRFGISYRFSPTVNVEGDINTISTKDLSAAGLGSKTALATNFDSLDVPLADIFQVAGFHQ 282

Query: 282 LNDQWAIHASINWTDWSSFKELTA----------------VFPEKSDLIKSENWEDNYRF 325
           +  ++A+H +  +T WS F ++TA                  P     +K   W+D++ F
Sbjct: 283 ITPKFALHYTAQYTQWSKFDQITAKDGVATIIPGQAGAGIKLPAGDIALKEYQWKDSWLF 342

Query: 326 ALGTTYQYDAKLALRAGVAYDTSAVDDKNRTATIPETDRTWVSVGGSYVATPQLTLDAGF 385
           +LG TY  + +  +RAG  +D   VD+ + + + P++DR W + G SY   PQ T+D G 
Sbjct: 343 SLGGTYTINEQFTVRAGYMHDQGVVDEIS-SISFPDSDRNWYTAGMSYHINPQNTVDFGI 401

Query: 386 TYIFAKDATINEPRDASDQTAAAIGGAFTGNVSGNVWLIGVQANYRF 432
            +I  ++  + E         +AI G        +     VQ +Y+F
Sbjct: 402 AFIKGEEVHLIE--------NSAITGPVNAITESSGMYYSVQYSYQF 440