Pairwise Alignments

Query, 432 a.a., aromatic hydrocarbon degradation protein from Vibrio cholerae E7946 ATCC 55056

Subject, 428 a.a., membrane protein involved in aromatic hydrocarbon degradation (RefSeq) from Shewanella sp. ANA-3

 Score =  196 bits (499), Expect = 9e-55
 Identities = 143/457 (31%), Positives = 224/457 (49%), Gaps = 61/457 (13%)

Query: 4   NKTLLSCAVAFGLASVSTFTQAAGFQLAEYSATGLGRAYAGEAAMADNASAQWRNPAMLT 63
           NKTLL+ AVA  LAS  TF  A+GFQL   SATG+GRA+AG+A +ADNAS   RNPA + 
Sbjct: 5   NKTLLAVAVA--LASSQTF--ASGFQLNSQSATGMGRAFAGDAVIADNASVLSRNPAAMA 60

Query: 64  YLEGTQVSAGAIYVNPNVDVEGTVNHAQLGKTHASSNDFAHDAVIPNFYLSHQLNEQMAL 123
             +   +S G  Y +  VDV+  VN         S +D     VIPN +  H ++++ A+
Sbjct: 61  LFDKDAISLGLTYADITVDVK-DVNFGGGAYDLGSIDDAGSSKVIPNIFYIHPIDDKFAV 119

Query: 124 GFALGTNYGMETD---LGTEFAASHFG--NQASVISKEANLNIAYQILPQLSIGGGVRYV 178
           GFA  +N+G  TD   L     A+ F    +  V +   N +++Y+I    SIG G+  V
Sbjct: 120 GFAAFSNFGTGTDASSLSKNKPAAPFDLLGETEVTTVNFNASVSYRINDMFSIGAGLDAV 179

Query: 179 MGEGHFGATAPAKNLIRHPVTNNVMTLPKGTTLKYMEGEDNSWGWQVGSAWQINQDHRVG 238
            GEG               +T N+ T P    L  ++ +  ++G  VG+  ++N+D+R G
Sbjct: 180 YGEGR--------------LTRNMGTTP----LVDVDADGWAFGGIVGATVELNKDNRFG 221

Query: 239 FAYKSEVVMDFEGHAEGVSYGSYKPGM-----------MSVTLPATAELASFHQLNDQWA 287
            +Y+    ++ EG    VS  +  PG+           + V L    ++A FHQ+  ++A
Sbjct: 222 ISYRFSPTVNVEGDINTVSMTTI-PGVGAVPVTTSFDSLDVPLADIFQVAGFHQITPKFA 280

Query: 288 IHASINWTDWSSFKELTA------------VFPEKSDLIKSENWEDNYRFALGTTYQYDA 335
           +H +   T W +F ++TA              P     +K   W+D++ F++G TY  + 
Sbjct: 281 LHYTAQHTQWGNFDQITAKDGTATIAAVGVTQPVGDVALKEYQWKDSWLFSVGGTYTINE 340

Query: 336 KLALRAGVAYDTSAVDDKNRTATIPETDRTWVSVGGSYVATPQLTLDAGFTYIFAKDATI 395
           +  +RAG  +D   VD+ + + + P++DR W + G SY   PQ T+D G  YI  ++  +
Sbjct: 341 QFTVRAGYMHDQGVVDEIS-SISFPDSDRNWYTAGMSYHINPQNTVDLGIAYIKGEEVHL 399

Query: 396 NEPRDASDQTAAAIGGAFTGNVSGNVWLIGVQANYRF 432
            E         +AI G              VQ +Y+F
Sbjct: 400 IE--------NSAITGPVNAVTESKGMYYSVQYSYQF 428