Pairwise Alignments

Query, 703 a.a., AsmA family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 606 a.a., asmA protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  361 bits (926), Expect = e-104
 Identities = 224/679 (32%), Positives = 341/679 (50%), Gaps = 88/679 (12%)

Query: 8   LLGLVVLIVGALLALVLLVNPNQFKPLIVEQAKKQTGLDLVIEGDIGWQFFPSIGFELGK 67
           L+ LV  +V   L L +  +PN FKP +V   KKQTG +LVI  D+ W FFP++G  LG 
Sbjct: 8   LVILVTFVVAVTLYLTVFFDPNDFKPEVVNAVKKQTGRELVITEDLSWTFFPTVGINLGG 67

Query: 68  TELKNPQGFASPNLFKVESVGIDVSVMPLLDKQLKIGNIRLDGAEFHLETLKDGRSNLDA 127
             L NP+GF   ++ +V     +V +MPL  KQ++I  + LDGA+ +L T K+G S+ D 
Sbjct: 68  VSLSNPEGFTPKSMLEVHKAVAEVELMPLFSKQIEIVQLSLDGAKINLVTRKNGSSSFDG 127

Query: 128 LTQAQSKPASAPATTDSAPASQPSSSEPAAAWSIELGGVSVSNAVLEITDKKAGSHTKLY 187
           LT + +  +S P        S+PS S+   A SI++GGVS++N  + + D+  G    + 
Sbjct: 128 LTGSTADKSSTP--------SEPSLSQAKLA-SIDVGGVSITNTQINLIDEAKGQTQTVT 178

Query: 188 DVQLSVAEFVPDNWTKATFAAKGDKDQQKFAAQGEAEVRLSADFKQYALRNINLDASFSD 247
             Q ++  F  D +    +           +++GE +++LS DF Q  +  +       D
Sbjct: 179 LKQFTLGAFSLDKFAPIAYELTASLPDMTLSSKGEGQIKLSHDFNQLVIEKL-------D 231

Query: 248 PSNQIDSAKLKLDTFEFDKANALTFSVAGKAADMKLNAQGSASLMVNQAISKVGLDALKL 307
            + Q++   +                        KL A+ S +       S++ LD  +L
Sbjct: 232 IATQVEGDAI---------------------PHKKLTAEVSVN-------SQIALDKKQL 263

Query: 308 QAELEGAALPQSPMKLSLDSQIAFDLTQNHLSVLLNKLTANALSFDGKADVTLA-DIPKV 366
            A+                               +NK     +S  GK  V  A  +P++
Sbjct: 264 SAD-------------------------------INKFAVEDISATGKLAVHYAGKVPQI 292

Query: 367 RFNLHSPEIDLDAFLGTKAQESQPAPAKEAAASSSSAPATNAPAEVEPDLSALKALDVAG 426
             NL   +IDLDA L     +S  A  +  A++SS A        +EPDL+AL  LD   
Sbjct: 293 NANLQLGDIDLDALL----PKSDTAEKQPIASTSSQA--------IEPDLTALNGLDARL 340

Query: 427 EISIDKFKASNAHLQNVKANFAVNRGVVDLKSFTANLYQGSVQASAQVDARKTPATYSVK 486
            +++   K +N   QN   +  +  GVVDLK  TA+LYQG +  +AQVDAR   A+Y   
Sbjct: 341 TLAVKSIKVANLSTQNWLMDLGIKNGVVDLKQLTADLYQGKLMLNAQVDARSKVASYQFD 400

Query: 487 KQIKGVQVKPLLKDVLNNEMLEGTGNIDVNVQGQSLTPSGIQKNLVGTVAINFADGAVKG 546
           KQI  VQ++PLLKD    E+L GT N  V  +G+SL P  ++KNL+        DGA+ G
Sbjct: 401 KQISAVQIQPLLKDAAELEILAGTANFSVKGKGKSLIPEQLKKNLLANGRFEITDGALYG 460

Query: 547 INVAHLIRTHYAKIKGQNVEEADAVKKTDFSAMTTTLKLNKGEVTTNDLNMQSPLLRIHG 606
           +N+  +IR+  AK+KG    E    +KTDFS++T    L  G     DL M SPL+R+ G
Sbjct: 461 VNIPQMIRSAQAKLKGDMSAETQEERKTDFSSLTGNFSLEHGVAANPDLAMSSPLIRLAG 520

Query: 607 EGKANYLQQNVDFLVRTSIVGTLEGQGGKSLDELRDVTIPINISGAWSDPKFRLVFDDVL 666
           +G AN L + +D+ + TS+V +L+GQGG   D L  + IP+ I+G +  P++ L    +L
Sbjct: 521 KGSANLLTETLDYRLTTSLVNSLKGQGGSGKDALAGIDIPLAITGTFQKPEYALDTQALL 580

Query: 667 KQKAKKEVDRGVEKLTDKI 685
             + K+E D+  EKL D +
Sbjct: 581 NNQLKEETDKAKEKLKDSL 599