Pairwise Alignments

Query, 324 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 344 a.a., GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 95.5 bits (236), Expect = 2e-24
 Identities = 61/176 (34%), Positives = 96/176 (54%), Gaps = 3/176 (1%)

Query: 140 KLAQHQLELEHLTHMDHLTQVYNRYAMDSLLPQALDIARLDRVSSALLMIDIDCFKEYND 199
           +LA+    LE L++ D LT + NR   D +L +     + +    +L+M+DID FK +ND
Sbjct: 161 ELAEANNRLEKLSNTDGLTNIGNRRLFDQMLQKEWSRGQRNNTPLSLIMLDIDHFKLFND 220

Query: 200 GYGHIQGDDVLRKVSQTLRQ-WKSNLDLCFRYGGDEFLIFMTRVDAKQCQQRAEKLMAMI 258
            YGH+ GDD L+ ++  L Q  +   +L  RYGG+EF+I +   D +     A+ +  +I
Sbjct: 221 HYGHLAGDDCLKMLANGLSQSGRRAGELVARYGGEEFVILLPNTDLQTALDTAKHVHQLI 280

Query: 259 HELNIPHLSSRVADHVTITVGIRHCDQIEKEMTAEKLVLVADKALFHAKHEQRGTI 314
             L IPH+ + +   VT++VG+  C     +  A +LV  AD AL+ AK   R  I
Sbjct: 281 QSLAIPHIKTNLG-IVTVSVGVA-CLLPSDKHNALELVHQADTALYLAKSAGRNCI 334