Pairwise Alignments

Query, 324 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 625 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 95.1 bits (235), Expect = 4e-24
 Identities = 61/183 (33%), Positives = 97/183 (53%), Gaps = 4/183 (2%)

Query: 137 TVEKLAQHQLELEHLTHMDHLTQVYNRYAMDSLLPQALDIARLDRVSSALLMIDIDCFKE 196
           T+ +L +   +L   + +D LT V NR A D  L     I+R      ALLM+DID FK 
Sbjct: 439 TLRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLLAESRISRRQETPIALLMLDIDRFKS 498

Query: 197 YNDGYGHIQGDDVLRKVSQTLRQ-WKSNLDLCFRYGGDEFLIFMTRVDAKQCQQRAEKLM 255
            ND +GH+ GD  L+ ++QTL+Q  K   DL  R+GG+EF I +    A    Q AE + 
Sbjct: 499 INDQFGHLAGDQALKLIAQTLQQHLKRPTDLVSRFGGEEFAIILPNTTADGALQVAESIR 558

Query: 256 AMIHELNIPHLSSRVADHVTITVGIRHCDQIEKEMTAEKLVLVADKALFHAKHEQRGTIH 315
             +  + +      +   +T+++G+   D I  E  + +L+  ADKAL+ AK+  R  + 
Sbjct: 559 DTVSCIGLTWEGKPIP--LTVSIGV-SADVIMNEQHSTELLEQADKALYQAKNSGRNQVK 615

Query: 316 MFS 318
           +++
Sbjct: 616 LYA 618