Pairwise Alignments

Query, 324 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 318 a.a., sensory box/GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 95.1 bits (235), Expect = 2e-24
 Identities = 80/306 (26%), Positives = 143/306 (46%), Gaps = 17/306 (5%)

Query: 14  EILQFIFQSLPEPTFLINKKGVYIEAWGGTDSERHHNPSY-LVGLNQYDVLPAAQAAWFT 72
           E ++   Q L E   L+N  G +I +     +E    P   L G +  + L     A + 
Sbjct: 23  ETIELFIQHLTEAMILVNANG-FIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYD 81

Query: 73  DVIQQAIEQG--CAKELEYEIDPTQLPCFDNVPGPSQKQYFSALVIPLPNTDMMLWTVRN 130
           +++   ++ G  C + +++    T L C     G ++    S   IP  +  M +  + +
Sbjct: 82  NLLSHDVQLGTNCGQPVQHPAQETTLIC---ASGKAKDVELSISYIP-GHEPMFVMVMHD 137

Query: 131 ISDYKHTVEKLAQHQLELEHLTHMDHLTQVYNRYAMDSLLPQALDIARLDRVSSALLMID 190
           ++ +K   +KL +       L   D LTQ+ NR   D +L Q  +         ++++ID
Sbjct: 138 LTHHKAENQKLRK-------LAATDSLTQLANRRYFDEMLQQHWEECTAKLRPISVVIID 190

Query: 191 IDCFKEYNDGYGHIQGDDVLRKVSQTLRQ-WKSNLDLCFRYGGDEFLIFMTRVDAKQCQQ 249
           +D FK +ND +GHIQGD+ LRK+++ +     + + L  RYGG+EF + +   +AK    
Sbjct: 191 VDYFKVFNDQFGHIQGDECLRKIAKVIAGIVPTEIGLAARYGGEEFALILPNHNAKMALT 250

Query: 250 RAEKLMAMIHELNIPHLSSRVADHVTITVGIRHCDQIEKEMTAEKLVLVADKALFHAKHE 309
            A+K+   I+ +       R    V+ + GI  C+   +  T+  +V  AD AL+ AK +
Sbjct: 251 IAQKIQQGINNIRFTDQGLRDYVSVSASQGIA-CEVNGQFRTSLAMVCAADTALYRAKAD 309

Query: 310 QRGTIH 315
            R  I+
Sbjct: 310 GRDRIN 315