Pairwise Alignments

Query, 324 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  130 bits (327), Expect = 4e-35
 Identities = 89/303 (29%), Positives = 152/303 (50%), Gaps = 16/303 (5%)

Query: 16  LQFIFQSLPEPTFLINKKGVYIEAWGGTDSERHHNPSYLVGLNQYDVLPAAQAAWFTDVI 75
           +  +  SLP+P F+I + G Y+  +GG D   +H+ S LVGL   DVL   +AA+F  +I
Sbjct: 8   MALVLHSLPDPAFVITQSGRYVAVFGGKDDRYYHDGSGLVGLYISDVLSENKAAYFLSII 67

Query: 76  QQAIEQGCAKELEYEIDPTQLPCFDNVPGPSQKQYFS----ALVIPLPNTDMMLWTVRNI 131
           ++A+        EYE+    +    +  GP++  +F     AL   + N  ++LW   NI
Sbjct: 68  EKALNSRNLLIEEYELSNKDVKGLPD-QGPTEPIWFEGRIQALDFLVDNEPVVLWVASNI 126

Query: 132 SDYKHTVEKLAQHQLELEHLTHMDHLTQVYNRYAMDSLLPQALDIARLDRVSSALLMIDI 191
           S  +H +E      ++L  L+  D LT +YNR+ ++  L    D      + +++LM+D+
Sbjct: 127 SK-RHDLE------VQLRQLSDTDQLTGLYNRHRLERDLNYLFDTYCRHHIPASILMLDL 179

Query: 192 DCFKEYNDGYGHIQGDDVLRKVSQTLRQWKSNLDLCFRYGGDEFLIFMTRVDAKQCQQRA 251
           D  K  ND  GH  GD+++  V+ T +Q     D  +R+GGDEF+I +  V+  Q    A
Sbjct: 180 DHLKLINDQLGHHAGDNIIMTVANTCKQQFRKTDSAYRFGGDEFVIALPGVEYTQAIVFA 239

Query: 252 EKLMAMIHELNIPHLSSRVADHVTITVGIRHCDQIEKEMTAEKLVLVADKALFHAKHEQR 311
           E L     +    H    +  + T+++G+      +K  + E  +  AD AL+ AK + +
Sbjct: 240 EFLCDCCFKELQKHAVKGL--YATVSIGVATIQANDK--SYEDTLKRADAALYQAKRDGK 295

Query: 312 GTI 314
             +
Sbjct: 296 NRV 298