Pairwise Alignments

Query, 324 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 324 a.a., sensory box/GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 93.2 bits (230), Expect = 8e-24
 Identities = 76/287 (26%), Positives = 131/287 (45%), Gaps = 21/287 (7%)

Query: 37  IEAWGGTDSERHH--NPSYLVGLNQYDVLPAAQAAWFTDVIQQAIEQGCAKELEYEIDPT 94
           I+ W G   E H   +P+ + G N +   P   A W    ++          + +E  P 
Sbjct: 34  IQLWNGF-MENHSGVSPNSIKGQNLFSRFPDLPATWLKQKMESVFMLKNRAFISWEQRPY 92

Query: 95  --QLPCFDNVPGPSQKQYFSALVIPLPNTDMMLWTVRNISDYKHTVEKLAQHQLEL---- 148
             Q   +  + G +   Y +  ++PL +   +   + +IS   + V  +A ++L+L    
Sbjct: 93  VFQFKNYRPITGRADFMYQNVTLLPLAS---LTGKITHISVIVYDVTDIAVNKLQLKAAN 149

Query: 149 ---EHLTHMDHLTQVYNRYAMDSLLPQALDI-ARLDRVSSALLMIDIDCFKEYNDGYGHI 204
              E L+  D LTQ++NR      L    D+ AR   ++S L+MIDID FK  ND YGH+
Sbjct: 150 EQLERLSQTDGLTQLHNRRHWQQCLEHEYDLYARYSGIAS-LVMIDIDHFKNINDTYGHL 208

Query: 205 QGDDVLRKVSQTLRQWKSNLDLCFRYGGDEFLIFMTRVDAKQCQQRAEKLMAMIHELNIP 264
            GD V++ ++  L       D   RYGG+EF + M            E+L   I    + 
Sbjct: 209 AGDKVIQHIAHILSHSLRETDCAGRYGGEEFAVVMPSTCGADALNFTERLREKIASSTVV 268

Query: 265 HLSSRVADHVTITVGIRHCDQIEKEMTAEKLVLVADKALFHAKHEQR 311
           +   ++   VT+++G+  C+  +   ++   +  +DKAL+ AK + R
Sbjct: 269 YEGLKI--KVTVSLGV--CELGKHISSSSSWISCSDKALYEAKQKGR 311