Pairwise Alignments

Query, 324 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 487 a.a., GGDEF domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 96.7 bits (239), Expect = 1e-24
 Identities = 85/299 (28%), Positives = 132/299 (44%), Gaps = 19/299 (6%)

Query: 29  LINKKGVYIEAWGGTDSERHHNPSYLVGLNQYDVLPAAQAAWFTDVIQQAIEQGCAKELE 88
           L+   G++   W  + +E  H+    +G  +      A AAW   +++ A         E
Sbjct: 180 LLPVTGLHAILWPPSPTEGAHDAELFIGAYRQT---EAHAAWTRLLLESAHRLARHDVAE 236

Query: 89  YEI------DPTQLPCFDNV---PGPSQKQYFSALVIPLPNTDMMLWTVRNISD--YKHT 137
           Y        +P+ LP    V   P  + K  F A+ + L  T  +        D   +H 
Sbjct: 237 YRTTALTHDEPSPLPEAGRVMMLPLGNGKNTFGAIAMALAETPALGKDQAQALDSVMRHL 296

Query: 138 VEKLAQHQLELEHLTHMDH--LTQVYNRYAMDSLLPQALDIARLDRVSSALLMIDIDCFK 195
              L    +  E     DH  LTQ++NR + D  L + +D  +   +   LLM+DID FK
Sbjct: 297 TLALRNAVVYREIKLQADHDALTQLHNRRSFDHRLAEEVDRHQRYGMPMTLLMLDIDHFK 356

Query: 196 EYNDGYGHIQGDDVLRKVSQTLRQWKSNLDLCFRYGGDEFLIFMTRVDAKQCQQRAEKLM 255
             ND YGH  GD VLR+V+QT+R      D   RYGG+EF + +   D K  +  AE+L 
Sbjct: 357 AVNDTYGHPAGDAVLREVAQTMRNACRTTDFAARYGGEEFCVILPHTDGKCGRIFAERLR 416

Query: 256 AMIHELNIPHLSSRVADHVTITVGIRHCDQIEKEMTAEKLVLVADKALFHAKHEQRGTI 314
             +    +      +A  VT+++G+         ++ E+LV  AD AL+ AK   R  +
Sbjct: 417 KRLASSRVEVDGKTIA--VTVSIGLATL-SAAAPLSPERLVCEADGALYAAKAAGRNIV 472