Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., Type IV fimbriae expression regulatory protein PilR from Pseudomonas fluorescens FW300-N2E2

 Score =  275 bits (704), Expect = 2e-78
 Identities = 163/434 (37%), Positives = 248/434 (57%), Gaps = 11/434 (2%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           +V+D   +  L    L  + +D        +A   +     DL L D+RLPD TG++++ 
Sbjct: 11  IVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQNLLAGEAFDLCLTDMRLPDGTGLELVQ 70

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKN 120
            ++++ P +P+  +TA+GS++TA++A++ GA DFL KP +  RLR  V +A+R    L  
Sbjct: 71  HIQQRYPQLPVAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALR----LPP 126

Query: 121 DVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASKRG 180
                    +  +G S  M +V + I+  A S+A ++I+GESG GKE+ A  IH    R 
Sbjct: 127 VATPGTTLERSLLGDSPPMLSVRKQIEKLARSQAPVYISGESGCGKELVARLIHEQGPRA 186

Query: 181 DKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL 240
           + PF+ +NC AIP +L+ESE FGH KG+F+GA  ++ G  +AA GGTLFLDE+ ++ L +
Sbjct: 187 NLPFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLAM 246

Query: 241 QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHL 300
           Q KLLR IQ    + VG  + + VDVR +CAT++D   EV  GRFR+DLYYRL VI L +
Sbjct: 247 QVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLNVIELRV 306

Query: 301 PPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVV 360
           PPLR R +D+  +A  +L  ++   G   V+L  + ++  R Y +PGNVR+L+N+L    
Sbjct: 307 PPLRERREDIELLANHMLQRLAANTGSPPVKLHPQALDALRSYRFPGNVRELENMLERAY 366

Query: 361 VLNEGREITLDMLPPPLNQMSA-PINRALPLAHENKVSVHEIFPLWMTEKQAIEQAIEAC 419
            L E ++I  D L       SA P N  L      +  + ++      E++ I QA+E  
Sbjct: 367 TLCEQQQIEADDLRLAEGNGSAEPGNPDLMQVDNLEDYLEDV------ERKLILQALEET 420

Query: 420 DGNIPRAATYLDVS 433
             N   AA  L +S
Sbjct: 421 RWNRTAAAQRLKLS 434